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Sample GSM437948 Query DataSets for GSM437948
Status Public on Jan 13, 2010
Title FFPE #4-50 ng rep1
Sample type RNA
 
Source name Human ovarian tumor
Organism Homo sapiens
Characteristics gender: Female
tissue: Ovary
Extracted molecule total RNA
Extraction protocol RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen)
Label Cy3
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing Raw data was analyzed using GenomeStudio v1.1
 
Submission date Aug 10, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17572 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tissue Samples
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples

Data table header descriptions
ID_REF
VALUE quantile normalized
FFPE #4-50 rep1.Avg_NBEADS
FFPE #4-50 rep1.BEAD_STDERR
FFPE #4-50 rep1.Detection Pval

Data table
ID_REF VALUE FFPE #4-50 rep1.Avg_NBEADS FFPE #4-50 rep1.BEAD_STDERR FFPE #4-50 rep1.Detection Pval
ILMN_1762337 766.1635 44 19.94092 0
ILMN_2055271 545.0079 31 11.86979 0
ILMN_2383229 572.8161 41 7.28589 0
ILMN_1806310 45.60836 29 2.638548 0.3883495
ILMN_1779670 923.8546 48 12.71356 0
ILMN_2321282 80.98985 36 4.2075 0.05825243
ILMN_1772582 431.5081 46 11.39361 0
ILMN_1717783 215.6255 32 10.83043 0.01294498
ILMN_1814316 5057.299 36 79.48403 0
ILMN_2359168 4614.307 35 76.82409 0
ILMN_1731507 105.119 29 6.477128 0.0420712
ILMN_1787689 70.1758 47 3.660762 0.08090615
ILMN_1745607 2797.399 41 67.82079 0
ILMN_2136495 306.0148 33 9.437621 0.003236246
ILMN_1668111 34.35576 40 1.97585 0.8705502
ILMN_2295559 44.75701 49 2.793234 0.4142395
ILMN_1735045 900.4319 45 30.9646 0
ILMN_1680754 58.67019 37 4.323568 0.1423948
ILMN_2375184 146.8094 44 4.060668 0.01941748
ILMN_1659452 143.9025 43 4.085182 0.01941748

Total number of rows: 24526

Table truncated, full table size 925 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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