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GEO accession:
Sample GSM437948
Query DataSets for GSM437948
Status
Public on Jan 13, 2010
Title
FFPE #4-50 ng rep1
Sample type
RNA
Source name
Human ovarian tumor
Organism
Homo sapiens
Characteristics
gender: Female
tissue: Ovary
Extracted molecule
total RNA
Extraction protocol
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen)
Label
Cy3
Label protocol
Standard Illumina labelling protocol
Hybridization protocol
Standard Illumina hybridization protocol
Scan protocol
Standard Illumina scanning protocol
Description
replicate 1
Data processing
Raw data was analyzed using GenomeStudio v1.1
Submission date
Aug 10, 2009
Last update date
Jan 13, 2010
Contact name
Craig April
E-mail(s)
capril@illumina.com
Organization name
Illumina, Inc.
Street address
9885 Towne Centre Drive
City
San Diego
State/province
CA
ZIP/Postal code
92121-1975
Country
USA
Platform ID
GPL6883
Series (2)
GSE17572
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tissue Samples
GSE17599
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples
Data table header descriptions
ID_REF
VALUE
quantile normalized
FFPE #4-50 rep1.Avg_NBEADS
FFPE #4-50 rep1.BEAD_STDERR
FFPE #4-50 rep1.Detection Pval
Data table
ID_REF
VALUE
FFPE #4-50 rep1.Avg_NBEADS
FFPE #4-50 rep1.BEAD_STDERR
FFPE #4-50 rep1.Detection Pval
ILMN_1762337
766.1635
44
19.94092
0
ILMN_2055271
545.0079
31
11.86979
0
ILMN_2383229
572.8161
41
7.28589
0
ILMN_1806310
45.60836
29
2.638548
0.3883495
ILMN_1779670
923.8546
48
12.71356
0
ILMN_2321282
80.98985
36
4.2075
0.05825243
ILMN_1772582
431.5081
46
11.39361
0
ILMN_1717783
215.6255
32
10.83043
0.01294498
ILMN_1814316
5057.299
36
79.48403
0
ILMN_2359168
4614.307
35
76.82409
0
ILMN_1731507
105.119
29
6.477128
0.0420712
ILMN_1787689
70.1758
47
3.660762
0.08090615
ILMN_1745607
2797.399
41
67.82079
0
ILMN_2136495
306.0148
33
9.437621
0.003236246
ILMN_1668111
34.35576
40
1.97585
0.8705502
ILMN_2295559
44.75701
49
2.793234
0.4142395
ILMN_1735045
900.4319
45
30.9646
0
ILMN_1680754
58.67019
37
4.323568
0.1423948
ILMN_2375184
146.8094
44
4.060668
0.01941748
ILMN_1659452
143.9025
43
4.085182
0.01941748
Total number of rows:
24526
Table truncated, full table size
925 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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