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GEO accession:
Sample GSM437943
Query DataSets for GSM437943
Status
Public on Jan 13, 2010
Title
FFPE #3-200 ng rep2
Sample type
RNA
Source name
Human ovarian tumor
Organism
Homo sapiens
Characteristics
gender: Female
tissue: Ovary
Extracted molecule
total RNA
Extraction protocol
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen)
Label
Cy3
Label protocol
Standard Illumina labelling protocol
Hybridization protocol
Standard Illumina hybridization protocol
Scan protocol
Standard Illumina scanning protocol
Description
replicate 2
Data processing
Raw data was analyzed using GenomeStudio v1.1
Submission date
Aug 10, 2009
Last update date
Jan 13, 2010
Contact name
Craig April
E-mail(s)
capril@illumina.com
Organization name
Illumina, Inc.
Street address
9885 Towne Centre Drive
City
San Diego
State/province
CA
ZIP/Postal code
92121-1975
Country
USA
Platform ID
GPL6883
Series (2)
GSE17572
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tissue Samples
GSE17599
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples
Data table header descriptions
ID_REF
VALUE
quantile normalized
FFPE #3-200 rep2.Avg_NBEADS
FFPE #3-200 rep2.BEAD_STDERR
FFPE #3-200 rep2.Detection Pval
Data table
ID_REF
VALUE
FFPE #3-200 rep2.Avg_NBEADS
FFPE #3-200 rep2.BEAD_STDERR
FFPE #3-200 rep2.Detection Pval
ILMN_1762337
352.1793
49
20.93284
0
ILMN_2055271
402.2525
24
14.5337
0
ILMN_2383229
92.57217
29
6.295826
0.04854369
ILMN_1806310
69.1543
46
4.024298
0.0776699
ILMN_1779670
438.1107
43
12.89966
0
ILMN_2321282
124.5212
32
8.729715
0.02588997
ILMN_1772582
76.8759
37
5.433403
0.06148867
ILMN_1717783
51.2887
45
3.945709
0.2071197
ILMN_1814316
8484.506
35
273.4528
0
ILMN_2359168
8271.653
36
314.2292
0
ILMN_1731507
735.3166
42
40.03828
0
ILMN_1787689
68.0013
31
5.504212
0.0776699
ILMN_1745607
5880.296
38
267.1304
0
ILMN_2136495
455.8021
37
15.11664
0
ILMN_1668111
70.38098
30
3.126388
0.06796116
ILMN_2295559
39.57441
47
4.409468
0.5889968
ILMN_1735045
1003.396
38
83.94815
0
ILMN_1680754
61.10702
26
6.448474
0.1067961
ILMN_2375184
171.6353
46
7.487617
0.01294498
ILMN_1659452
173.1932
46
6.340254
0.01294498
Total number of rows:
24526
Table truncated, full table size
928 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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