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GEO accession:
Sample GSM437940
Query DataSets for GSM437940
Status
Public on Jan 13, 2010
Title
FFPE #4-200 ng rep1
Sample type
RNA
Source name
Human ovarian tumor
Organism
Homo sapiens
Characteristics
gender: Female
tissue: Ovary
Extracted molecule
total RNA
Extraction protocol
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen)
Label
Cy3
Label protocol
Standard Illumina labelling protocol
Hybridization protocol
Standard Illumina hybridization protocol
Scan protocol
Standard Illumina scanning protocol
Description
replicate 1
Data processing
Raw data was analyzed using GenomeStudio v1.1
Submission date
Aug 10, 2009
Last update date
Jan 13, 2010
Contact name
Craig April
E-mail(s)
capril@illumina.com
Organization name
Illumina, Inc.
Street address
9885 Towne Centre Drive
City
San Diego
State/province
CA
ZIP/Postal code
92121-1975
Country
USA
Platform ID
GPL6883
Series (2)
GSE17572
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tissue Samples
GSE17599
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples
Data table header descriptions
ID_REF
VALUE
quantile normalized
FFPE #4-200 rep1.Avg_NBEADS
FFPE #4-200 rep1.BEAD_STDERR
FFPE #4-200 rep1.Detection Pval
Data table
ID_REF
VALUE
FFPE #4-200 rep1.Avg_NBEADS
FFPE #4-200 rep1.BEAD_STDERR
FFPE #4-200 rep1.Detection Pval
ILMN_1762337
849.1962
40
31.13185
0
ILMN_2055271
413.3846
39
10.5746
0
ILMN_2383229
211.6714
31
5.224846
0.01294498
ILMN_1806310
50.69854
36
2.651751
0.223301
ILMN_1779670
1011.249
47
20.13436
0
ILMN_2321282
92.46949
42
3.138734
0.0420712
ILMN_1772582
494.9431
37
14.99942
0
ILMN_1717783
234.5562
38
11.07758
0.01294498
ILMN_1814316
5248.441
34
162.5015
0
ILMN_2359168
4955.505
48
94.73053
0
ILMN_1731507
135.2336
48
4.979947
0.03236246
ILMN_1787689
63.1535
33
3.412125
0.1100324
ILMN_1745607
3301.38
36
119.8482
0
ILMN_2136495
426.8383
18
13.70899
0
ILMN_1668111
87.84146
42
2.790598
0.05501618
ILMN_2295559
35.83973
46
2.597383
0.7702265
ILMN_1735045
1066.547
42
41.23637
0
ILMN_1680754
54.56522
21
3.198178
0.1650485
ILMN_2375184
116.7312
46
3.324044
0.03559871
ILMN_1659452
118.5852
51
3.33582
0.03559871
Total number of rows:
24526
Table truncated, full table size
931 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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