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GEO accession:
Sample GSM437939
Query DataSets for GSM437939
Status
Public on Jan 13, 2010
Title
FFPE #3-200 ng rep1
Sample type
RNA
Source name
Human ovarian tumor
Organism
Homo sapiens
Characteristics
gender: Female
tissue: Ovary
Extracted molecule
total RNA
Extraction protocol
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen)
Label
Cy3
Label protocol
Standard Illumina labelling protocol
Hybridization protocol
Standard Illumina hybridization protocol
Scan protocol
Standard Illumina scanning protocol
Description
replicate 1
Data processing
Raw data was analyzed using GenomeStudio v1.1
Submission date
Aug 10, 2009
Last update date
Jan 13, 2010
Contact name
Craig April
E-mail(s)
capril@illumina.com
Organization name
Illumina, Inc.
Street address
9885 Towne Centre Drive
City
San Diego
State/province
CA
ZIP/Postal code
92121-1975
Country
USA
Platform ID
GPL6883
Series (2)
GSE17572
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tissue Samples
GSE17599
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples
Data table header descriptions
ID_REF
VALUE
quantile normalized
FFPE #3-200 rep1.Avg_NBEADS
FFPE #3-200 rep1.BEAD_STDERR
FFPE #3-200 rep1.Detection Pval
Data table
ID_REF
VALUE
FFPE #3-200 rep1.Avg_NBEADS
FFPE #3-200 rep1.BEAD_STDERR
FFPE #3-200 rep1.Detection Pval
ILMN_1762337
324.9347
39
11.55448
0.006472492
ILMN_2055271
384.3773
26
12.79398
0
ILMN_2383229
152.8317
32
4.409746
0.01618123
ILMN_1806310
49.91093
44
3.226102
0.2200647
ILMN_1779670
766.6316
34
13.53854
0
ILMN_2321282
86.81058
41
3.229125
0.05501618
ILMN_1772582
148.1117
45
4.102251
0.01618123
ILMN_1717783
51.2887
28
2.768158
0.197411
ILMN_1814316
8191.244
49
177.2796
0
ILMN_2359168
7591.391
54
142.835
0
ILMN_1731507
748.2656
39
31.77313
0
ILMN_1787689
57.05449
41
3.21462
0.1294498
ILMN_1745607
5511.753
43
167.8699
0
ILMN_2136495
452.7758
29
9.62765
0
ILMN_1668111
207.8944
40
4.171416
0.01294498
ILMN_2295559
30.18707
46
2.20041
0.9805825
ILMN_1735045
841.7911
28
38.20363
0
ILMN_1680754
48.01876
25
3.599068
0.2815534
ILMN_2375184
184.5752
38
5.144768
0.01294498
ILMN_1659452
186.834
33
5.582558
0.01294498
Total number of rows:
24526
Table truncated, full table size
932 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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