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GEO accession:
Sample GSM437938
Query DataSets for GSM437938
Status
Public on Jan 13, 2010
Title
FFPE #2-200 ng rep1
Sample type
RNA
Source name
Human ovarian tumor
Organism
Homo sapiens
Characteristics
gender: Female
tissue: Ovary
Extracted molecule
total RNA
Extraction protocol
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen)
Label
Cy3
Label protocol
Standard Illumina labelling protocol
Hybridization protocol
Standard Illumina hybridization protocol
Scan protocol
Standard Illumina scanning protocol
Description
replicate 1
Data processing
Raw data was analyzed using GenomeStudio v1.1
Submission date
Aug 10, 2009
Last update date
Jan 13, 2010
Contact name
Craig April
E-mail(s)
capril@illumina.com
Organization name
Illumina, Inc.
Street address
9885 Towne Centre Drive
City
San Diego
State/province
CA
ZIP/Postal code
92121-1975
Country
USA
Platform ID
GPL6883
Series (2)
GSE17572
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tissue Samples
GSE17599
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples
Data table header descriptions
ID_REF
VALUE
quantile normalized
FFPE #2-200 rep1.Avg_NBEADS
FFPE #2-200 rep1.BEAD_STDERR
FFPE #2-200 rep1.Detection Pval
Data table
ID_REF
VALUE
FFPE #2-200 rep1.Avg_NBEADS
FFPE #2-200 rep1.BEAD_STDERR
FFPE #2-200 rep1.Detection Pval
ILMN_1762337
1036.216
34
32.58858
0
ILMN_2055271
401.3141
34
8.078712
0
ILMN_2383229
265.4096
36
5.355858
0.006472492
ILMN_1806310
47.81088
40
3.027896
0.2880259
ILMN_1779670
1134.899
50
15.54829
0
ILMN_2321282
75.32803
42
3.141881
0.06796116
ILMN_1772582
156.2146
40
4.984026
0.01618123
ILMN_1717783
51.55333
34
3.887559
0.2135922
ILMN_1814316
8251.316
42
180.3001
0
ILMN_2359168
8434.054
46
115.9987
0
ILMN_1731507
716.8884
33
20.12419
0
ILMN_1787689
67.57708
38
2.32792
0.08414239
ILMN_1745607
3556.196
47
86.81416
0
ILMN_2136495
196.8569
35
6.162012
0.01294498
ILMN_1668111
36.47021
38
2.494895
0.7411003
ILMN_2295559
39.50084
42
2.2446
0.579288
ILMN_1735045
991.1129
53
29.70149
0
ILMN_1680754
58.16913
16
2.809445
0.1553398
ILMN_2375184
186.4745
47
4.562391
0.01294498
ILMN_1659452
171.1968
42
3.883568
0.01294498
Total number of rows:
24526
Table truncated, full table size
929 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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