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GEO accession:
Sample GSM437937
Query DataSets for GSM437937
Status
Public on Jan 13, 2010
Title
FFPE #1 200 ng rep1
Sample type
RNA
Source name
Human ovarian tumor
Organism
Homo sapiens
Characteristics
gender: Female
tissue: Ovary
Extracted molecule
total RNA
Extraction protocol
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen)
Label
Cy3
Label protocol
Standard Illumina labelling protocol
Hybridization protocol
Standard Illumina hybridization protocol
Scan protocol
Standard Illumina scanning protocol
Description
replicate 1
Data processing
Raw data was analyzed using GenomeStudio v1.1
Submission date
Aug 10, 2009
Last update date
Jan 13, 2010
Contact name
Craig April
E-mail(s)
capril@illumina.com
Organization name
Illumina, Inc.
Street address
9885 Towne Centre Drive
City
San Diego
State/province
CA
ZIP/Postal code
92121-1975
Country
USA
Platform ID
GPL6883
Series (2)
GSE17572
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tissue Samples
GSE17599
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples
Data table header descriptions
ID_REF
VALUE
quantile normalized
FFPE #1-200 rep1.Avg_NBEADS
FFPE #1-200 rep1.BEAD_STDERR
FFPE #1-200 rep1.Detection Pval
Data table
ID_REF
VALUE
FFPE #1-200 rep1.Avg_NBEADS
FFPE #1-200 rep1.BEAD_STDERR
FFPE #1-200 rep1.Detection Pval
ILMN_1762337
367.7287
36
17.89713
0
ILMN_2055271
363.6369
29
10.70018
0
ILMN_2383229
326.4236
43
6.971803
0
ILMN_1806310
46.30972
51
2.291373
0.2038835
ILMN_1779670
1877.107
41
30.31062
0
ILMN_2321282
74.03307
38
3.94931
0.04530744
ILMN_1772582
108.4935
45
5.34254
0.01618123
ILMN_1717783
49.95054
43
3.939663
0.1294498
ILMN_1814316
7313.391
38
162.2402
0
ILMN_2359168
6835.113
50
113.0322
0
ILMN_1731507
89.5322
37
7.003907
0.02588997
ILMN_1787689
67.81732
42
4.723174
0.05825243
ILMN_1745607
4502.929
34
174.0202
0
ILMN_2136495
189.965
30
7.942939
0.009708738
ILMN_1668111
76.64512
41
3.22184
0.03883495
ILMN_2295559
36.41728
52
2.643765
0.6666667
ILMN_1735045
509.815
59
19.68623
0
ILMN_1680754
51.76015
29
5.581903
0.1003236
ILMN_2375184
212.2622
48
6.374387
0.006472492
ILMN_1659452
191.4508
44
6.578925
0.009708738
Total number of rows:
24526
Table truncated, full table size
920 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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