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Sample GSM437749 Query DataSets for GSM437749
Status Public on Jan 13, 2010
Title MCF-7 5 ng rep2
Sample type RNA
 
Source name Breast Adenocarcinoma (MCF-7) Total RNA (Ambion Cat# AM7846)
Organism Homo sapiens
Characteristics cell type: Breast Adenocarcinoma (MCF-7)
input: 5 ng
Extracted molecule total RNA
Extraction protocol Ambion extraction protocol
Label Cy3
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 2
Data processing Raw data was analyzed using GenomeStudio v1.1
 
Submission date Aug 07, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17565 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples - dilution series
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples

Data table header descriptions
ID_REF
VALUE quantile normalized
MCF-7 5 ng rep2.Avg_NBEADS
MCF-7 5 ng rep2.BEAD_STDERR
MCF-7 5 ng rep2.Detection Pval

Data table
ID_REF VALUE MCF-7 5 ng rep2.Avg_NBEADS MCF-7 5 ng rep2.BEAD_STDERR MCF-7 5 ng rep2.Detection Pval
ILMN_1762337 1118.603 56 106.0278 0
ILMN_2055271 111.286 53 13.81856 0.009708738
ILMN_2383229 45.71802 34 9.181218 0.2168285
ILMN_1806310 36.15592 36 8.609204 0.618123
ILMN_1779670 21.60428 42 7.601908 0.987055
ILMN_2321282 50.39166 45 8.137178 0.1359223
ILMN_1772582 94.21522 40 14.89439 0.01618123
ILMN_1717783 405.8878 33 59.6829 0
ILMN_1814316 104.6717 35 14.66489 0.01294498
ILMN_2359168 89.70348 38 7.994196 0.01941748
ILMN_1731507 33.05513 29 8.71922 0.7540453
ILMN_1787689 47.85606 42 6.660144 0.171521
ILMN_1745607 69.77084 40 10.91254 0.03236246
ILMN_2136495 83.01273 32 10.95429 0.02265372
ILMN_1668111 35.94389 39 6.608329 0.6278317
ILMN_2295559 35.61211 38 6.057022 0.6504855
ILMN_1735045 439.2492 40 56.82621 0
ILMN_1680754 46.93859 30 8.14374 0.184466
ILMN_2375184 44.51799 43 5.950581 0.2653722
ILMN_1659452 50.25082 44 8.09846 0.1391586

Total number of rows: 24526

Table truncated, full table size 934 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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