NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM437742 Query DataSets for GSM437742
Status Public on Jan 13, 2010
Title MCF-7 100 ng rep1
Sample type RNA
 
Source name Breast Adenocarcinoma (MCF-7) Total RNA (Ambion Cat# AM7846)
Organism Homo sapiens
Characteristics cell type: Breast Adenocarcinoma (MCF-7)
input: 100 ng
Extracted molecule total RNA
Extraction protocol Ambion extraction protocol
Label Cy3
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing Raw data was analyzed using GenomeStudio v1.1
 
Submission date Aug 07, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17565 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples - dilution series
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples

Data table header descriptions
ID_REF
VALUE quantile normalized
MCF-7 100 ng rep1.Avg_NBEADS
MCF-7 100 ng rep1.BEAD_STDERR
MCF-7 100 ng rep1.Detection Pval

Data table
ID_REF VALUE MCF-7 100 ng rep1.Avg_NBEADS MCF-7 100 ng rep1.BEAD_STDERR MCF-7 100 ng rep1.Detection Pval
ILMN_1762337 865.3541 53 71.99487 0
ILMN_2055271 108.082 34 16.36522 0.01294498
ILMN_2383229 42.60509 37 6.55433 0.2524272
ILMN_1806310 37.52234 36 7.764016 0.4368932
ILMN_1779670 39.43859 42 4.952881 0.3656958
ILMN_2321282 50.45432 43 8.028337 0.08737864
ILMN_1772582 81.73244 45 8.508913 0.02588997
ILMN_1717783 210.6375 50 21.22074 0
ILMN_1814316 39.74363 47 5.63204 0.3495146
ILMN_2359168 47.9323 37 7.16002 0.1197411
ILMN_1731507 32.01621 35 5.540442 0.7119741
ILMN_1787689 51.56887 32 7.841594 0.08090615
ILMN_1745607 69.59865 37 7.544898 0.03883495
ILMN_2136495 122.5427 44 13.50425 0.009708738
ILMN_1668111 28.38552 36 7.153261 0.8576052
ILMN_2295559 39.01301 41 5.064017 0.3786408
ILMN_1735045 420.4797 49 31.10255 0
ILMN_1680754 43.94886 36 6.621974 0.197411
ILMN_2375184 42.04551 40 7.031615 0.2653722
ILMN_1659452 45.53615 57 6.787822 0.1488673

Total number of rows: 24526

Table truncated, full table size 941 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap