NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM437725 Query DataSets for GSM437725
Status Public on Jan 13, 2010
Title Raji degraded rep2
Sample type RNA
 
Source name Burkitts Lymphoma (Raji) Total RNA (Ambion Cat# AM7876)
Organism Homo sapiens
Characteristics treatment: artificially degraded 95C for 30 minutes
cell type: Burkitts Lymphoma (Raji)
Extracted molecule total RNA
Extraction protocol Ambion extraction protocol
Label Cy3
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 2
Data processing Raw data was analyzed using GenomeStudio v1.1
 
Submission date Aug 07, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17564 Whole-Genome Gene Expression of Formalin-Fixed, Paraffin-Embedded Intact and Artificially Degraded Tissue Samples
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples

Data table header descriptions
ID_REF
VALUE quantile normalized
Raji degraded rep2.Avg_NBEADS
Raji degraded rep2.BEAD_STDERR
Raji degraded rep2.Detection Pval

Data table
ID_REF VALUE Raji degraded rep2.Avg_NBEADS Raji degraded rep2.BEAD_STDERR Raji degraded rep2.Detection Pval
ILMN_1762337 582.5593 49 13.49313 0
ILMN_2055271 63.68146 28 2.621882 0.06796116
ILMN_2383229 61.11141 33 2.822814 0.07119741
ILMN_1806310 32.09219 42 1.473857 0.6990291
ILMN_1779670 31.24058 45 1.085252 0.7443365
ILMN_2321282 48.78445 35 2.84904 0.1197411
ILMN_1772582 92.64675 44 2.594535 0.0420712
ILMN_1717783 31.64149 33 2.181571 0.7184466
ILMN_1814316 127.0672 32 3.972199 0.02265372
ILMN_2359168 113.843 27 3.720503 0.02912621
ILMN_1731507 31.93437 34 2.505154 0.7087379
ILMN_1787689 33.84941 39 2.120585 0.5728155
ILMN_1745607 30.5713 37 2.031277 0.7831715
ILMN_2136495 30.09778 38 1.463007 0.8058252
ILMN_1668111 30.80899 30 1.53896 0.7734628
ILMN_2295559 34.25784 37 1.79935 0.5404531
ILMN_1735045 714.9506 51 23.29625 0
ILMN_1680754 31.23911 27 2.250099 0.7443365
ILMN_2375184 41.65893 45 1.836823 0.2168285
ILMN_1659452 67.79315 62 1.940223 0.05501618

Total number of rows: 24526

Table truncated, full table size 982 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap