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Sample GSM437720 Query DataSets for GSM437720
Status Public on Jan 13, 2010
Title MCF-7 intact rep2
Sample type RNA
 
Source name Breast Adenocarcinoma (MCF-7) Total RNA (Ambion Cat# AM7846)
Organism Homo sapiens
Characteristics treatment: intact
cell type: Breast Adenocarcinoma (MCF-7)
Extracted molecule total RNA
Extraction protocol Ambion extraction protocol
Label Cy3
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 2
Data processing Raw data was analyzed using GenomeStudio v1.1
 
Submission date Aug 07, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17564 Whole-Genome Gene Expression of Formalin-Fixed, Paraffin-Embedded Intact and Artificially Degraded Tissue Samples
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples

Data table header descriptions
ID_REF
VALUE quantile normalized
MCF-7 intact rep2.Avg_NBEADS
MCF-7 intact rep2.BEAD_STDERR
MCF-7 intact rep2.Detection Pval

Data table
ID_REF VALUE MCF-7 intact rep2.Avg_NBEADS MCF-7 intact rep2.BEAD_STDERR MCF-7 intact rep2.Detection Pval
ILMN_1762337 324.4641 49 21.51357 0
ILMN_2055271 40.8241 38 3.224258 0.1132686
ILMN_2383229 37.48028 30 2.630384 0.2071197
ILMN_1806310 30.91141 42 1.80994 0.6828479
ILMN_1779670 33.0421 43 2.444375 0.4789644
ILMN_2321282 45.8765 52 2.829802 0.06148867
ILMN_1772582 48.84757 41 3.669623 0.04530744
ILMN_1717783 77.67963 40 7.10669 0.01294498
ILMN_1814316 33.8546 37 2.924421 0.4142395
ILMN_2359168 32.03671 47 2.38123 0.579288
ILMN_1731507 25.15907 36 2.29476 0.9838188
ILMN_1787689 41.14861 32 3.122522 0.1067961
ILMN_1745607 42.46796 39 2.800538 0.08737864
ILMN_2136495 57.60027 39 4.186833 0.03236246
ILMN_1668111 27.61584 48 1.815342 0.8964401
ILMN_2295559 33.62217 55 1.366451 0.433657
ILMN_1735045 185.2128 53 15.94679 0
ILMN_1680754 37.61202 36 2.493495 0.2071197
ILMN_2375184 35.60988 46 1.617219 0.3171521
ILMN_1659452 39.75068 36 3.032855 0.1359223

Total number of rows: 24526

Table truncated, full table size 960 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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