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GEO accession:
Sample GSM437655
Query DataSets for GSM437655
Status
Public on Jan 13, 2010
Title
FF lung tumor #3
Sample type
RNA
Source name
Lung tumor
Organism
Homo sapiens
Characteristics
tissue: lung tumor
Treatment protocol
Fresh-Frozen
Growth protocol
Fresh-Frozen
Extracted molecule
total RNA
Extraction protocol
Fresh-frozen RNA was extracted with a standard Rneasy Kit (Qiagen); FFPE RNA was extracted with a FormaPure Kit (Agencourt Bioscience Corporation)
Label
Cy3
Label protocol
Standard Illumina labelling protocol
Hybridization protocol
Standard Illumina hybridization protocol
Scan protocol
Standard Illumina scanning protocol
Description
replicate 3
Data processing
Raw data was analyzed using GenomeStudio v1.1
Submission date
Aug 07, 2009
Last update date
Jan 13, 2010
Contact name
Craig April
E-mail(s)
capril@illumina.com
Organization name
Illumina, Inc.
Street address
9885 Towne Centre Drive
City
San Diego
State/province
CA
ZIP/Postal code
92121-1975
Country
USA
Platform ID
GPL6883
Series (2)
GSE17558
Whole-Genome Gene Expression Profiling of FFPE in Normal and Tumor Lung Tissue Samples
GSE17599
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples
Data table header descriptions
ID_REF
VALUE
quantile normalized
FF Lung TUM #3.Avg_NBEADS
FF Lung TUM #3.BEAD_STDERR
FF Lung TUM #3.Detection Pval
Data table
ID_REF
VALUE
FF Lung TUM #3.Avg_NBEADS
FF Lung TUM #3.BEAD_STDERR
FF Lung TUM #3.Detection Pval
ILMN_1762337
528.8234
44
37.42378
0
ILMN_2055271
123.8025
31
12.24879
0.05501618
ILMN_2383229
84.1395
32
10.03854
0.3883495
ILMN_1806310
89.31804
20
13.40069
0.3074434
ILMN_1779670
80.88788
51
6.008294
0.4466019
ILMN_2321282
128.1562
35
13.43785
0.04854369
ILMN_1772582
522.2543
45
30.85944
0
ILMN_1717783
230.7905
29
21.64552
0.009708738
ILMN_1814316
441.7518
20
36.20645
0
ILMN_2359168
387.6902
31
22.55534
0
ILMN_1731507
71.38505
24
10.57499
0.6634304
ILMN_1787689
102.8733
36
12.71485
0.1035599
ILMN_1745607
4145.679
45
190.5569
0
ILMN_2136495
87.02344
40
8.741331
0.3398058
ILMN_1668111
66.66093
44
8.059768
0.7928802
ILMN_2295559
68.07919
46
7.794325
0.7605178
ILMN_1735045
1096.632
38
81.69466
0
ILMN_1680754
84.11566
39
8.190355
0.3883495
ILMN_2375184
120.7897
35
13.84086
0.05501618
ILMN_1659452
122.9002
41
14.46302
0.05501618
Total number of rows:
24526
Table truncated, full table size
936 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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