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GEO accession:
Sample GSM437654
Query DataSets for GSM437654
Status
Public on Jan 13, 2010
Title
FF lung tumor #2
Sample type
RNA
Source name
Lung tumor
Organism
Homo sapiens
Characteristics
tissue: lung tumor
Treatment protocol
Fresh-Frozen
Growth protocol
Fresh-Frozen
Extracted molecule
total RNA
Extraction protocol
Fresh-frozen RNA was extracted with a standard Rneasy Kit (Qiagen); FFPE RNA was extracted with a FormaPure Kit (Agencourt Bioscience Corporation)
Label
Cy3
Label protocol
Standard Illumina labelling protocol
Hybridization protocol
Standard Illumina hybridization protocol
Scan protocol
Standard Illumina scanning protocol
Description
replicate 2
Data processing
Raw data was analyzed using GenomeStudio v1.1
Submission date
Aug 07, 2009
Last update date
Jan 13, 2010
Contact name
Craig April
E-mail(s)
capril@illumina.com
Organization name
Illumina, Inc.
Street address
9885 Towne Centre Drive
City
San Diego
State/province
CA
ZIP/Postal code
92121-1975
Country
USA
Platform ID
GPL6883
Series (2)
GSE17558
Whole-Genome Gene Expression Profiling of FFPE in Normal and Tumor Lung Tissue Samples
GSE17599
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples
Data table header descriptions
ID_REF
VALUE
quantile normalized
FF Lung TUM #2.Avg_NBEADS
FF Lung TUM #2.BEAD_STDERR
FF Lung TUM #2.Detection Pval
Data table
ID_REF
VALUE
FF Lung TUM #2.Avg_NBEADS
FF Lung TUM #2.BEAD_STDERR
FF Lung TUM #2.Detection Pval
ILMN_1762337
458.4483
45
27.0183
0
ILMN_2055271
161.8792
31
10.72112
0.02912621
ILMN_2383229
88.68211
36
10.77191
0.2653722
ILMN_1806310
78.55607
42
6.6685
0.4919094
ILMN_1779670
109.4767
46
9.742996
0.09708738
ILMN_2321282
116.7695
39
10.56949
0.06796116
ILMN_1772582
485.3518
46
27.14976
0
ILMN_1717783
199.4969
27
14.16125
0.02265372
ILMN_1814316
368.104
31
16.82886
0
ILMN_2359168
313.6909
43
11.35361
0
ILMN_1731507
60.83099
30
6.93614
0.8867314
ILMN_1787689
87.10297
32
8.037462
0.2880259
ILMN_1745607
4015.05
40
285.7939
0
ILMN_2136495
96.10004
30
7.740008
0.171521
ILMN_1668111
46.79905
32
3.312055
1
ILMN_2295559
79.76623
57
8.017123
0.4660194
ILMN_1735045
893.5154
42
53.58804
0
ILMN_1680754
81.72005
33
8.835196
0.3980583
ILMN_2375184
97.25636
38
5.895391
0.1682848
ILMN_1659452
96.21444
46
6.914832
0.171521
Total number of rows:
24526
Table truncated, full table size
936 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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