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GEO accession:
Sample GSM437653
Query DataSets for GSM437653
Status
Public on Jan 13, 2010
Title
FF lung tumor #1
Sample type
RNA
Source name
Lung tumor
Organism
Homo sapiens
Characteristics
tissue: lung tumor
Treatment protocol
Fresh-Frozen
Growth protocol
Fresh-Frozen
Extracted molecule
total RNA
Extraction protocol
Fresh-frozen RNA was extracted with a standard Rneasy Kit (Qiagen); FFPE RNA was extracted with a FormaPure Kit (Agencourt Bioscience Corporation)
Label
Cy3
Label protocol
Standard Illumina labelling protocol
Hybridization protocol
Standard Illumina hybridization protocol
Scan protocol
Standard Illumina scanning protocol
Description
replicate 1
Data processing
Raw data was analyzed using GenomeStudio v1.1
Submission date
Aug 07, 2009
Last update date
Jan 13, 2010
Contact name
Craig April
E-mail(s)
capril@illumina.com
Organization name
Illumina, Inc.
Street address
9885 Towne Centre Drive
City
San Diego
State/province
CA
ZIP/Postal code
92121-1975
Country
USA
Platform ID
GPL6883
Series (2)
GSE17558
Whole-Genome Gene Expression Profiling of FFPE in Normal and Tumor Lung Tissue Samples
GSE17599
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples
Data table header descriptions
ID_REF
VALUE
quantile normalized
FF Lung TUM #1.Avg_NBEADS
FF Lung TUM #1.BEAD_STDERR
FF Lung TUM #1.Detection Pval
Data table
ID_REF
VALUE
FF Lung TUM #1.Avg_NBEADS
FF Lung TUM #1.BEAD_STDERR
FF Lung TUM #1.Detection Pval
ILMN_1762337
503.088
43
36.72118
0
ILMN_2055271
153.4759
24
10.38786
0.02588997
ILMN_2383229
78.59724
35
8.383386
0.4627832
ILMN_1806310
74.20811
31
9.149058
0.5339806
ILMN_1779670
80.86208
41
6.016743
0.3915858
ILMN_2321282
92.5046
35
7.666602
0.1650485
ILMN_1772582
615.7787
43
35.70886
0
ILMN_1717783
242.9701
43
20.17112
0.003236246
ILMN_1814316
429.3285
42
17.50448
0
ILMN_2359168
407.6706
28
26.03747
0
ILMN_1731507
58.86913
21
9.284059
0.9223301
ILMN_1787689
84.68938
47
7.028511
0.3106796
ILMN_1745607
4322.078
25
333.4692
0
ILMN_2136495
121.8477
38
12.99667
0.05177994
ILMN_1668111
73.15602
40
9.218342
0.5533981
ILMN_2295559
59.71815
33
6.577127
0.9126214
ILMN_1735045
832.5318
36
77.03971
0
ILMN_1680754
80.99041
29
8.508845
0.3883495
ILMN_2375184
100.5766
33
12.27107
0.1067961
ILMN_1659452
98.24774
53
9.487887
0.1229773
Total number of rows:
24526
Table truncated, full table size
932 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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