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Sample GSM437652 Query DataSets for GSM437652
Status Public on Jan 13, 2010
Title FF lung normal adjacent tumor #4
Sample type RNA
 
Source name Normal adjacent lung tumor
Organism Homo sapiens
Characteristics tissue: adjacent lung tumor
Treatment protocol Fresh-Frozen
Growth protocol Fresh-Frozen
Extracted molecule total RNA
Extraction protocol Fresh-frozen RNA was extracted with a standard Rneasy Kit (Qiagen); FFPE RNA was extracted with a FormaPure Kit (Agencourt Bioscience Corporation)
Label Cy3
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 4
Data processing Raw data was analyzed using GenomeStudio v1.1
 
Submission date Aug 07, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17558 Whole-Genome Gene Expression Profiling of FFPE in Normal and Tumor Lung Tissue Samples
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples

Data table header descriptions
ID_REF
VALUE quantile normalized
FF Lung NAT #4.Avg_NBEADS
FF Lung NAT #4.BEAD_STDERR
FF Lung NAT #4.Detection Pval

Data table
ID_REF VALUE FF Lung NAT #4.Avg_NBEADS FF Lung NAT #4.BEAD_STDERR FF Lung NAT #4.Detection Pval
ILMN_1762337 1313.606 40 94.47255 0
ILMN_2055271 123.9359 32 13.02885 0.05501618
ILMN_2383229 87.82274 35 12.71679 0.2815534
ILMN_1806310 71.51723 36 7.857892 0.6601942
ILMN_1779670 73.07492 29 6.009516 0.6213592
ILMN_2321282 112.2372 39 12.69894 0.06796116
ILMN_1772582 75.12051 42 7.565584 0.5631068
ILMN_1717783 95.24232 31 15.03944 0.171521
ILMN_1814316 109.4341 29 10.07946 0.07443365
ILMN_2359168 103.0343 38 10.45316 0.1229773
ILMN_1731507 66.23193 29 7.265743 0.8058252
ILMN_1787689 93.48174 29 9.628297 0.1941748
ILMN_1745607 9146.85 44 374.2141 0
ILMN_2136495 55.13445 31 7.191228 0.9773463
ILMN_1668111 87.42943 38 7.753903 0.2815534
ILMN_2295559 92.96149 35 10.86254 0.2006472
ILMN_1735045 888.3137 57 57.36557 0
ILMN_1680754 93.87186 28 12.06004 0.1941748
ILMN_2375184 118.8072 44 12.81801 0.05825243
ILMN_1659452 109.4767 41 13.90179 0.07443365

Total number of rows: 24526

Table truncated, full table size 933 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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