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GEO accession:
Sample GSM437645
Query DataSets for GSM437645
Status
Public on Jan 13, 2010
Title
FFPE lung tumor #1
Sample type
RNA
Source name
Lung tumor
Organism
Homo sapiens
Characteristics
tissue: lung tumor
Treatment protocol
Formalin-fixed, paraffin-embedded
Growth protocol
Formalin-fixed, paraffin-embedded
Extracted molecule
total RNA
Extraction protocol
Fresh-frozen RNA was extracted with a standard Rneasy Kit (Qiagen); FFPE RNA was extracted with a FormaPure Kit (Agencourt Bioscience Corporation)
Label
Cy3
Label protocol
Standard Illumina labelling protocol
Hybridization protocol
Standard Illumina hybridization protocol
Scan protocol
Standard Illumina scanning protocol
Description
replicate 1
Data processing
Raw data was analyzed using GenomeStudio v1.1
Submission date
Aug 07, 2009
Last update date
Jan 13, 2010
Contact name
Craig April
E-mail(s)
capril@illumina.com
Organization name
Illumina, Inc.
Street address
9885 Towne Centre Drive
City
San Diego
State/province
CA
ZIP/Postal code
92121-1975
Country
USA
Platform ID
GPL6883
Series (2)
GSE17558
Whole-Genome Gene Expression Profiling of FFPE in Normal and Tumor Lung Tissue Samples
GSE17599
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples
Data table header descriptions
ID_REF
VALUE
quantile normalized
FFPE Lung TUM #1.Avg_NBEADS
FFPE Lung TUM #1.BEAD_STDERR
FFPE Lung TUM #1.Detection Pval
Data table
ID_REF
VALUE
FFPE Lung TUM #1.Avg_NBEADS
FFPE Lung TUM #1.BEAD_STDERR
FFPE Lung TUM #1.Detection Pval
ILMN_1762337
795.3211
35
27.13811
0
ILMN_2055271
238.2543
29
11.30442
0.02588997
ILMN_2383229
105.8613
30
9.218585
0.2200647
ILMN_1806310
88.84962
35
4.774932
0.433657
ILMN_1779670
80.30552
39
4.997662
0.5987055
ILMN_2321282
127.0842
39
5.936193
0.08737864
ILMN_1772582
149.8566
23
6.504772
0.04854369
ILMN_1717783
228.4791
33
11.53703
0.02588997
ILMN_1814316
68.52444
32
3.665047
0.8770226
ILMN_2359168
89.66581
30
6.084311
0.4110032
ILMN_1731507
89.91628
43
6.185207
0.407767
ILMN_1787689
90.01714
32
4.06889
0.407767
ILMN_1745607
6714.311
40
190.5703
0
ILMN_2136495
490.6596
40
13.30457
0
ILMN_1668111
71.59003
26
5.601841
0.8090615
ILMN_2295559
78.07603
37
4.421371
0.6634304
ILMN_1735045
2889.354
39
98.23229
0
ILMN_1680754
83.39178
25
4.880847
0.5275081
ILMN_2375184
127.0418
39
7.260711
0.08737864
ILMN_1659452
86.43454
33
3.84731
0.4886732
Total number of rows:
24526
Table truncated, full table size
950 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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