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Sample GSM437642 Query DataSets for GSM437642
Status Public on Jan 13, 2010
Title FFPE lung normal adjacent tumor #2
Sample type RNA
 
Source name Normal adjacent lung tumor
Organism Homo sapiens
Characteristics tissue: adjacent lung tumor
Treatment protocol Formalin-fixed, paraffin-embedded
Growth protocol Formalin-fixed, paraffin-embedded
Extracted molecule total RNA
Extraction protocol Fresh-frozen RNA was extracted with a standard Rneasy Kit (Qiagen); FFPE RNA was extracted with a FormaPure Kit (Agencourt Bioscience Corporation)
Label Cy3
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 2
Data processing Raw data was analyzed using GenomeStudio v1.1
 
Submission date Aug 07, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17558 Whole-Genome Gene Expression Profiling of FFPE in Normal and Tumor Lung Tissue Samples
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples

Data table header descriptions
ID_REF
VALUE quantile normalized
FFPE Lung NAT #2.Avg_NBEADS
FFPE Lung NAT #2.BEAD_STDERR
FFPE Lung NAT #2.Detection Pval

Data table
ID_REF VALUE FFPE Lung NAT #2.Avg_NBEADS FFPE Lung NAT #2.BEAD_STDERR FFPE Lung NAT #2.Detection Pval
ILMN_1762337 1426.248 35 36.39447 0
ILMN_2055271 210.668 33 7.806169 0.03559871
ILMN_2383229 102.6113 31 6.65322 0.2330097
ILMN_1806310 90.44954 35 3.956401 0.433657
ILMN_1779670 102.8007 42 3.987544 0.2330097
ILMN_2321282 87.70525 32 4.723049 0.4692557
ILMN_1772582 92.36254 44 4.72996 0.4012945
ILMN_1717783 92.79178 31 4.946672 0.3915858
ILMN_1814316 81.73607 30 4.856159 0.6213592
ILMN_2359168 89.85081 39 3.764654 0.433657
ILMN_1731507 81.50409 45 4.674353 0.6278317
ILMN_1787689 108.5528 43 3.783261 0.1747573
ILMN_1745607 12745.32 37 394.7948 0
ILMN_2136495 79.16072 30 4.953859 0.6666667
ILMN_1668111 75.81791 32 4.394956 0.7475728
ILMN_2295559 75.99168 37 4.081971 0.7475728
ILMN_1735045 3255.882 50 61.67096 0
ILMN_1680754 95.97405 30 4.718496 0.3365696
ILMN_2375184 93.40304 33 4.9268 0.3915858
ILMN_1659452 108.0135 46 3.823723 0.1779935

Total number of rows: 24526

Table truncated, full table size 978 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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