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Sample GSM437641 Query DataSets for GSM437641
Status Public on Jan 13, 2010
Title FFPE lung normal adjacent tumor #1
Sample type RNA
 
Source name Normal adjacent lung tumor
Organism Homo sapiens
Characteristics tissue: adjacent lung tumor
Treatment protocol Formalin-fixed, paraffin-embedded
Growth protocol Formalin-fixed, paraffin-embedded
Extracted molecule total RNA
Extraction protocol Fresh-frozen RNA was extracted with a standard Rneasy Kit (Qiagen); FFPE RNA was extracted with a FormaPure Kit (Agencourt Bioscience Corporation)
Label Cy3
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing Raw data was analyzed using GenomeStudio v1.1
 
Submission date Aug 07, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17558 Whole-Genome Gene Expression Profiling of FFPE in Normal and Tumor Lung Tissue Samples
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples

Data table header descriptions
ID_REF
VALUE quantile normalized
FFPE Lung NAT #1.Avg_NBEADS
FFPE Lung NAT #1.BEAD_STDERR
FFPE Lung NAT #1.Detection Pval

Data table
ID_REF VALUE FFPE Lung NAT #1.Avg_NBEADS FFPE Lung NAT #1.BEAD_STDERR FFPE Lung NAT #1.Detection Pval
ILMN_1762337 1163.956 31 33.12424 0
ILMN_2055271 227.8638 37 11.75354 0.02265372
ILMN_2383229 90.22124 27 7.806631 0.3042071
ILMN_1806310 107.8912 33 4.954164 0.1391586
ILMN_1779670 98.71661 37 6.23734 0.2006472
ILMN_2321282 105.33 35 6.984651 0.1521036
ILMN_1772582 71.39514 43 3.907947 0.7993528
ILMN_1717783 77.93907 36 5.486128 0.6019418
ILMN_1814316 66.17812 25 4.174529 0.8899676
ILMN_2359168 81.249 32 4.698494 0.4983819
ILMN_1731507 84.09129 28 6.289727 0.4271845
ILMN_1787689 96.80097 30 5.000345 0.2265372
ILMN_1745607 11676.13 34 383.2954 0
ILMN_2136495 85.36568 21 8.365507 0.4045307
ILMN_1668111 60.81488 32 3.472247 0.9385113
ILMN_2295559 123.43 34 7.302597 0.08737864
ILMN_1735045 3050.757 45 80.10126 0
ILMN_1680754 92.80995 35 6.677898 0.2621359
ILMN_2375184 106.6312 43 6.342156 0.1521036
ILMN_1659452 89.20941 37 5.264499 0.3300971

Total number of rows: 24526

Table truncated, full table size 967 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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