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Sample GSM433933 Query DataSets for GSM433933
Status Public on Feb 01, 2010
Title HapMap normal cell line NA12144
Sample type genomic
Source name HapMap normal cell line NA12144
Organism Homo sapiens
Characteristics disease status: normal
Biomaterial provider Coriell cell line NA12144
Treatment protocol cells were grown under standard conditions
Growth protocol melanoma cell lines and short-term cultures were grown as described in Lin et al, Cancer Research (2008), 68:664-673
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from melanomas as described in Lin et al, Cancer Research (2008), 68:664-673. DNA from HapMap normal samples was obtained from Coriell cell repository
Label biotin
Label protocol Standard Affymetrix protocol.
Hybridization protocol Standard Affymetrix protocol.
Scan protocol Standard Affymetrix protocol.
Description hybridized to Affy SNP 6.0
Data processing Probe-level intensities were scaled so that the sample-specific median value is 1000.
For further data processing details, please see: The Cancer Genome Atlas Research Network (2008) Nature, 455:1061-1068.
Submission date Jul 27, 2009
Last update date Nov 21, 2009
Contact name Michael Berger
Organization name The Broad Instititute
Department Cancer Program
Street address 7 Cambridge Center
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
Platform ID GPL6801
Series (2)
GSE17359 Affymetrix SNP array data for melanoma short-term cultures and cell lines
GSE17593 Melanoma short-term cultures and cell lines: expression profiling and CNV analyses

Data table header descriptions
VALUE signal intensity

Data table
SNP_A-2131660 3876.83
SNP_A-1967418 671.5
SNP_A-1969580 2749.3345
SNP_A-4263484 2133
SNP_A-1978185 1582.281
SNP_A-4264431 1300.5
SNP_A-1980898 1114.9905
SNP_A-1983139 2222.5
SNP_A-4265735 1479
SNP_A-1995832 1532
SNP_A-1995893 2435.5
SNP_A-1997689 3244.5
SNP_A-1997709 1371.5
SNP_A-1997896 1903.8765
SNP_A-1997922 987.5
SNP_A-2000230 2748.846
SNP_A-2000332 3361.3045
SNP_A-2000337 1489.5
SNP_A-2000342 3044
SNP_A-4268173 1182

Total number of rows: 1855448

Table truncated, full table size 36565 Kbytes.

Supplementary file Size Download File type/resource
GSM433933.CEL.gz 29.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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