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Sample GSM433930 Query DataSets for GSM433930
Status Public on Feb 01, 2010
Title HapMap normal cell line NA19143
Sample type genomic
 
Source name HapMap normal cell line NA19143
Organism Homo sapiens
Characteristics disease status: normal
Biomaterial provider Coriell cell line NA19143
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA19143
Treatment protocol cells were grown under standard conditions
Growth protocol melanoma cell lines and short-term cultures were grown as described in Lin et al, Cancer Research (2008), 68:664-673
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from melanomas as described in Lin et al, Cancer Research (2008), 68:664-673. DNA from HapMap normal samples was obtained from Coriell cell repository
Label biotin
Label protocol Standard Affymetrix protocol.
 
Hybridization protocol Standard Affymetrix protocol.
Scan protocol Standard Affymetrix protocol.
Description hybridized to Affy SNP 6.0
Data processing Probe-level intensities were scaled so that the sample-specific median value is 1000.
For further data processing details, please see: The Cancer Genome Atlas Research Network (2008) Nature, 455:1061-1068.
 
Submission date Jul 27, 2009
Last update date Nov 21, 2009
Contact name Michael Berger
E-mail(s) berger@broadinstitute.org
Organization name The Broad Instititute
Department Cancer Program
Street address 7 Cambridge Center
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
 
Platform ID GPL6801
Series (2)
GSE17359 Affymetrix SNP array data for melanoma short-term cultures and cell lines
GSE17593 Melanoma short-term cultures and cell lines: expression profiling and CNV analyses

Data table header descriptions
ID_REF
VALUE signal intensity

Data table
ID_REF VALUE
SNP_A-2131660 3634
SNP_A-1967418 644.5
SNP_A-1969580 2890.95
SNP_A-4263484 2039.5
SNP_A-1978185 1579.6185
SNP_A-4264431 1496
SNP_A-1980898 1057.3015
SNP_A-1983139 2329.5
SNP_A-4265735 1409
SNP_A-1995832 1391.5
SNP_A-1995893 2038
SNP_A-1997689 2978.5
SNP_A-1997709 1122
SNP_A-1997896 2218.5
SNP_A-1997922 1173.5
SNP_A-2000230 2890.835
SNP_A-2000332 3380.332
SNP_A-2000337 1762
SNP_A-2000342 2972.5
SNP_A-4268173 1190.5

Total number of rows: 1855448

Table truncated, full table size 36667 Kbytes.




Supplementary file Size Download File type/resource
GSM433930.CEL.gz 30.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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