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Sample GSM433924 Query DataSets for GSM433924
Status Public on Feb 01, 2010
Title HapMap normal cell line NA18870
Sample type genomic
Source name HapMap normal cell line NA18870
Organism Homo sapiens
Characteristics disease status: normal
Biomaterial provider Coriell cell line NA18870
Treatment protocol cells were grown under standard conditions
Growth protocol melanoma cell lines and short-term cultures were grown as described in Lin et al, Cancer Research (2008), 68:664-673
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from melanomas as described in Lin et al, Cancer Research (2008), 68:664-673. DNA from HapMap normal samples was obtained from Coriell cell repository
Label biotin
Label protocol Standard Affymetrix protocol.
Hybridization protocol Standard Affymetrix protocol.
Scan protocol Standard Affymetrix protocol.
Description hybridized to Affy SNP 6.0
Data processing Probe-level intensities were scaled so that the sample-specific median value is 1000.
For further data processing details, please see: The Cancer Genome Atlas Research Network (2008) Nature, 455:1061-1068.
Submission date Jul 27, 2009
Last update date Nov 21, 2009
Contact name Michael Berger
Organization name The Broad Instititute
Department Cancer Program
Street address 7 Cambridge Center
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
Platform ID GPL6801
Series (2)
GSE17359 Affymetrix SNP array data for melanoma short-term cultures and cell lines
GSE17593 Melanoma short-term cultures and cell lines: expression profiling and CNV analyses

Data table header descriptions
VALUE signal intensity

Data table
SNP_A-2131660 3892.5
SNP_A-1967418 598.1905
SNP_A-1969580 3906.646
SNP_A-4263484 1936
SNP_A-1978185 1588.549
SNP_A-4264431 1432.5
SNP_A-1980898 1103.8515
SNP_A-1983139 2184.7855
SNP_A-4265735 1287.5
SNP_A-1995832 1464.047
SNP_A-1995893 2079
SNP_A-1997689 3431.8665
SNP_A-1997709 915
SNP_A-1997896 1898.5
SNP_A-1997922 1195
SNP_A-2000230 2658.006
SNP_A-2000332 3117.836
SNP_A-2000337 1718.5
SNP_A-2000342 2872.5
SNP_A-4268173 1059.5

Total number of rows: 1855448

Table truncated, full table size 36706 Kbytes.

Supplementary file Size Download File type/resource
GSM433924.CEL.gz 29.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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