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Sample GSM433923 Query DataSets for GSM433923
Status Public on Feb 01, 2010
Title HapMap normal cell line NA18863
Sample type genomic
Source name HapMap normal cell line NA18863
Organism Homo sapiens
Characteristics disease status: normal
Biomaterial provider Coriell cell line NA18863
Treatment protocol cells were grown under standard conditions
Growth protocol melanoma cell lines and short-term cultures were grown as described in Lin et al, Cancer Research (2008), 68:664-673
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from melanomas as described in Lin et al, Cancer Research (2008), 68:664-673. DNA from HapMap normal samples was obtained from Coriell cell repository
Label biotin
Label protocol Standard Affymetrix protocol.
Hybridization protocol Standard Affymetrix protocol.
Scan protocol Standard Affymetrix protocol.
Description hybridized to Affy SNP 6.0
Data processing Probe-level intensities were scaled so that the sample-specific median value is 1000.
For further data processing details, please see: The Cancer Genome Atlas Research Network (2008) Nature, 455:1061-1068.
Submission date Jul 27, 2009
Last update date Nov 21, 2009
Contact name Michael Berger
Organization name The Broad Instititute
Department Cancer Program
Street address 7 Cambridge Center
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
Platform ID GPL6801
Series (2)
GSE17359 Affymetrix SNP array data for melanoma short-term cultures and cell lines
GSE17593 Melanoma short-term cultures and cell lines: expression profiling and CNV analyses

Data table header descriptions
VALUE signal intensity

Data table
SNP_A-2131660 4479
SNP_A-1967418 669
SNP_A-1969580 3628.6735
SNP_A-4263484 2115.5
SNP_A-1978185 2281.8075
SNP_A-4264431 1590.275
SNP_A-1980898 1278.5
SNP_A-1983139 2873
SNP_A-4265735 1364.5
SNP_A-1995832 1226
SNP_A-1995893 2221
SNP_A-1997689 3241.5
SNP_A-1997709 1033
SNP_A-1997896 1545.5
SNP_A-1997922 1193.5
SNP_A-2000230 3067.848
SNP_A-2000332 3145.6175
SNP_A-2000337 1832.5
SNP_A-2000342 3695.5
SNP_A-4268173 1320.5

Total number of rows: 1855448

Table truncated, full table size 36764 Kbytes.

Supplementary file Size Download File type/resource
GSM433923.CEL.gz 28.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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