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Sample GSM433919 Query DataSets for GSM433919
Status Public on Feb 01, 2010
Title HapMap normal cell line NA18504
Sample type genomic
Source name HapMap normal cell line NA18504
Organism Homo sapiens
Characteristics disease status: normal
Biomaterial provider Coriell cell line NA18504
Treatment protocol cells were grown under standard conditions
Growth protocol melanoma cell lines and short-term cultures were grown as described in Lin et al, Cancer Research (2008), 68:664-673
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from melanomas as described in Lin et al, Cancer Research (2008), 68:664-673. DNA from HapMap normal samples was obtained from Coriell cell repository
Label biotin
Label protocol Standard Affymetrix protocol.
Hybridization protocol Standard Affymetrix protocol.
Scan protocol Standard Affymetrix protocol.
Description hybridized to Affy SNP 6.0
Data processing Probe-level intensities were scaled so that the sample-specific median value is 1000.
For further data processing details, please see: The Cancer Genome Atlas Research Network (2008) Nature, 455:1061-1068.
Submission date Jul 27, 2009
Last update date Nov 21, 2009
Contact name Michael Berger
Organization name The Broad Instititute
Department Cancer Program
Street address 7 Cambridge Center
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
Platform ID GPL6801
Series (2)
GSE17359 Affymetrix SNP array data for melanoma short-term cultures and cell lines
GSE17593 Melanoma short-term cultures and cell lines: expression profiling and CNV analyses

Data table header descriptions
VALUE signal intensity

Data table
SNP_A-2131660 3653
SNP_A-1967418 696.5
SNP_A-1969580 3030
SNP_A-4263484 2056
SNP_A-1978185 1718
SNP_A-4264431 1617.264
SNP_A-1980898 1093.073
SNP_A-1983139 2278
SNP_A-4265735 1493.5
SNP_A-1995832 1610
SNP_A-1995893 2153
SNP_A-1997689 2709
SNP_A-1997709 1304
SNP_A-1997896 2070
SNP_A-1997922 1191.5
SNP_A-2000230 3064.5865
SNP_A-2000332 2951.5895
SNP_A-2000337 2008.5
SNP_A-2000342 3121.698
SNP_A-4268173 1035

Total number of rows: 1855448

Table truncated, full table size 36623 Kbytes.

Supplementary file Size Download File type/resource
GSM433919.CEL.gz 30.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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