|
Status |
Public on Sep 02, 2021 |
Title |
CLL597_mRNA |
Sample type |
RNA |
|
|
Source name |
CD19+ B cells
|
Organism |
Homo sapiens |
Characteristics |
tissue: Peripheral blood disease state: chronic lymphocytic leukemia
|
Extracted molecule |
total RNA |
Extraction protocol |
RNA was purified using Qiagen RNAeasy Kits according to the manufacturer's protocol
|
Label |
biotin
|
Label protocol |
Purified RNA was amplified using Nugen Ovation Pico SL or Ovation Pico kits and labeled using Nugen Encore Biotin kit
|
|
|
Hybridization protocol |
Products were hybridized to Affymetrix Human Gene 2.0 ST arrays according to the manufacturer's protocol
|
Scan protocol |
GS3000
|
Data processing |
Gene expression levels were determined using the Applied Biosystems Transcriptome Analysis Console (v4.0.2.15) using rma normalization, HuGene2.0.na36 annotations, and default settings. probe group file: HuGene-2_0-st.pgf meta-probeset file: HuGene-2_0-st-v1.na36.transcript.csv
|
|
|
Submission date |
Feb 24, 2020 |
Last update date |
Sep 02, 2021 |
Contact name |
Jared Andrews |
E-mail(s) |
jared.andrews@stjude.org
|
Organization name |
St. Jude Children's Research Hospital
|
Department |
Developmental Neurobiology
|
Street address |
262 Danny Thomas Pl
|
City |
Memphis |
State/province |
Tennessee |
ZIP/Postal code |
38105 |
Country |
USA |
|
|
Platform ID |
GPL16686 |
Series (2) |
GSE145847 |
Key Super Enhancers Drive Tumor-Suppressing Transcription Feedback Programs in Mature B Cell Cancers (RNA array) |
GSE145848 |
Key Super Enhancers Drive Tumor-Suppressing Transcription Feedback Programs in Mature B Cell Cancers |
|