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Sample GSM4337665 Query DataSets for GSM4337665
Status Public on Sep 02, 2021
Title CC020514_mRNA
Sample type RNA
 
Source name CD19+/CD10+/CD44low/CXCR4- B cells
Organism Homo sapiens
Characteristics tissue: Tonsil
disease state: healthy
Extracted molecule total RNA
Extraction protocol RNA was purified using Qiagen RNAeasy Kits according to the manufacturer's protocol
Label biotin
Label protocol Purified RNA was amplified using Nugen Ovation Pico SL or Ovation Pico kits and labeled using Nugen Encore Biotin kit
 
Hybridization protocol Products were hybridized to Affymetrix Human Gene 2.0 ST arrays according to the manufacturer's protocol
Scan protocol GS3000
Description GSM1517181
Data processing Gene expression levels were determined using the Applied Biosystems Transcriptome Analysis Console (v4.0.2.15) using rma normalization, HuGene2.0.na36 annotations, and default settings.
probe group file: HuGene-2_0-st.pgf
meta-probeset file: HuGene-2_0-st-v1.na36.transcript.csv
 
Submission date Feb 24, 2020
Last update date Sep 02, 2021
Contact name Jared Andrews
E-mail(s) jared.andrews@stjude.org
Organization name St. Jude Children's Research Hospital
Department Developmental Neurobiology
Street address 262 Danny Thomas Pl
City Memphis
State/province Tennessee
ZIP/Postal code 38105
Country USA
 
Platform ID GPL16686
Series (2)
GSE145847 Key Super Enhancers Drive Tumor-Suppressing Transcription Feedback Programs in Mature B Cell Cancers (RNA array)
GSE145848 Key Super Enhancers Drive Tumor-Suppressing Transcription Feedback Programs in Mature B Cell Cancers

Data table header descriptions
ID_REF
VALUE rma normalized gene expression levels from Transcriptome Analysis Console

Data table
ID_REF VALUE
16801305 7.59
16826160 7.39
16732584 8.83
16957312 7.64
16978834 3.93
17014017 1.96
16887840 7.33
16697196 8
16912379 7.34
16960698 7.86
16855682 2.65
17123284 7.82
17048190 7.27
16868576 8.28
16756132 3.07
16855673 4.65
16719515 8.08
17062253 1.44
17014029 2.2
16879916 8.16

Total number of rows: 48226

Table truncated, full table size 654 Kbytes.




Supplementary file Size Download File type/resource
GSM4337665_23133.CEL.gz 7.6 Mb (ftp)(http) CEL
Processed data included within Sample table
Processed data are available on Series record

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