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Sample GSM4296885 Query DataSets for GSM4296885
Status Public on Aug 10, 2021
Title Actinin-BirA* 4
Sample type SRA
 
Source name iPSC-CMs (cardiomyocytes)
Organism Homo sapiens
Characteristics age: Day 25
background: PGP1
cell type: iPSC-CMs (cardiomyocytes)
Extracted molecule total RNA
Extraction protocol Samples were trizoled and routine RNA extraction protocol was followed
Illumina TruSeq Stranded Total RNA library preparation with Ribo-Zero depletion for rRNA
 
Library strategy RIP-Seq
Library source transcriptomic
Library selection other
Instrument model Illumina NextSeq 500
 
Data processing Trimmed reads were aligned using STAR
HTSeq was utilized to convert files to raw counts
Counts were analyzed tith DESeq2
Genome_build: h38
Supplementary_files_format_and_content: STAR alignment .bam files were converted to .counts using HTSeq (.counts files provided)
 
Submission date Feb 05, 2020
Last update date Aug 10, 2021
Contact name Travis Hinson
Organization name JAX-GM
Street address 10 Discovery Dr
City Farmington
State/province Connecticut
ZIP/Postal code 06030
Country USA
 
Platform ID GPL18573
Series (1)
GSE144806 RNA-Immunoprecipitation Sequencing of Actinin-BirA* vs. Control iPSC-CMs
Relations
BioSample SAMN14003302
SRA SRX7680933

Supplementary file Size Download File type/resource
GSM4296885_Actinin-BirA4_RAligned.counts.txt.gz 195.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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