|
| Status |
Public on Feb 04, 2020 |
| Title |
Sciatic nerve macrophages 5 days after nerve crush |
| Sample type |
SRA |
| |
|
| Source name |
Sciatic nerve
|
| Organism |
Mus musculus |
| Characteristics |
strain: C57BL/6
number of cells: 2059
|
| Treatment protocol |
All Methods listed in Ydens et al. Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system . Nature Neuroscience. 2019.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
All Methods listed in Ydens et al. Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system . Nature Neuroscience. 2019.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Description |
10x Genomics – v1
Sciatic nerve macrophages 5 days after nerve crush
|
| Data processing |
Raw data bcl files were first demultiplexed using Cell Ranger 2.0.2 mkfastq
Demultiplexed data was then processed using the Cell Ranger 2.0.2 count pipeline
Genome_build: mm10
Supplementary_files_format_and_content: tab-delimited text files including raw counts (output CellRanger Count) for each sample
|
| |
|
| Submission date |
Feb 03, 2020 |
| Last update date |
Feb 04, 2020 |
| Contact name |
Liesbet Martens |
| E-mail(s) |
liesbet.martens@irc.vib-ugent.be
|
| Organization name |
VIB-University of Ghent
|
| Department |
VIB Inflammation Research Center
|
| Street address |
Technologiepark 927
|
| City |
Zwijnaarde |
| ZIP/Postal code |
9052 |
| Country |
Belgium |
| |
|
| Platform ID |
GPL19057 |
| Series (2) |
| GSE144707 |
Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system (single cells) |
| GSE144708 |
Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system |
|
| Relations |
| BioSample |
SAMN13977053 |
| SRA |
SRX7668404 |
