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Sample GSM4294041 Query DataSets for GSM4294041
Status Public on Feb 04, 2020
Title MHCII low scMacs 10 days after nerve crush SnMac_MHCII_lo_D10_1
Sample type RNA
 
Source name Sciatic Nerve
Organism Mus musculus
Characteristics strain: C57BL/6
Treatment protocol All Methods listed in Ydens et al. Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system . Nature Neuroscience. 2019.
Growth protocol All Methods listed in Ydens et al. Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system . Nature Neuroscience. 2019.
Extracted molecule total RNA
Extraction protocol All Methods listed in Ydens et al. Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system . Nature Neuroscience. 2019.
Label biotin
Label protocol All Methods listed in Ydens et al. Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system . Nature Neuroscience. 2019.
 
Hybridization protocol All Methods listed in Ydens et al. Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system . Nature Neuroscience. 2019.
Scan protocol Affymetrix Gene ChIP Scanner 3000 7G
Description MHCII low scMacs 10 days after nerve crush
MHCII low scMacs 10 days after nerve crush
Data processing Data were processed using limma Bioconductor. Normalisation was done by RMA.
 
Submission date Feb 03, 2020
Last update date Feb 04, 2020
Contact name Liesbet Martens
E-mail(s) liesbet.martens@irc.vib-ugent.be
Organization name VIB-University of Ghent
Department VIB Inflammation Research Center
Street address Technologiepark 927
City Zwijnaarde
ZIP/Postal code 9052
Country Belgium
 
Platform ID GPL6246
Series (2)
GSE144702 Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system (microarray)
GSE144708 Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system

Data table header descriptions
ID_REF
VALUE All samples passed quality control, and the Robust Multi-array Average (RMA) procedure was used to normalize data within arrays (probeset summarization, background correction and log2-transformation) and between arrays (quantile normalization).

Data table
ID_REF VALUE
10338001 12.97158714
10338002 5.737944695
10338003 11.18339224
10338004 10.40999358
10338005 2.757605442
10338006 2.987865092
10338007 3.372085681
10338008 3.909193065
10338009 7.174210548
10338010 2.799890471
10338011 5.4226719
10338012 2.936964436
10338013 2.575306839
10338014 2.648229652
10338015 2.639539366
10338016 6.732194375
10338017 13.79401614
10338018 6.098833507
10338019 4.812303764
10338020 7.288737519

Total number of rows: 35556

Table truncated, full table size 725 Kbytes.




Supplementary file Size Download File type/resource
GSM4294041_SnMac_MHCII_lo_D10_1.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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