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Sample GSM4294039 Query DataSets for GSM4294039
Status Public on Feb 04, 2020
Title MHCII high scMacs 10 days after nerve crush SnMac_MHCII_hi_D10_3
Sample type RNA
 
Source name Sciatic Nerve
Organism Mus musculus
Characteristics strain: C57BL/6
Treatment protocol All Methods listed in Ydens et al. Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system . Nature Neuroscience. 2019.
Growth protocol All Methods listed in Ydens et al. Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system . Nature Neuroscience. 2019.
Extracted molecule total RNA
Extraction protocol All Methods listed in Ydens et al. Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system . Nature Neuroscience. 2019.
Label biotin
Label protocol All Methods listed in Ydens et al. Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system . Nature Neuroscience. 2019.
 
Hybridization protocol All Methods listed in Ydens et al. Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system . Nature Neuroscience. 2019.
Scan protocol Affymetrix Gene ChIP Scanner 3000 7G
Description MHCII high scMacs 10 days after nerve crush
MHCII high scMacs 10 days after nerve crush
Data processing Data were processed using limma Bioconductor. Normalisation was done by RMA.
 
Submission date Feb 03, 2020
Last update date Feb 04, 2020
Contact name Liesbet Martens
E-mail(s) liesbet.martens@irc.vib-ugent.be
Organization name VIB-University of Ghent
Department VIB Inflammation Research Center
Street address Technologiepark 927
City Zwijnaarde
ZIP/Postal code 9052
Country Belgium
 
Platform ID GPL6246
Series (2)
GSE144702 Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system (microarray)
GSE144708 Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system

Data table header descriptions
ID_REF
VALUE All samples passed quality control, and the Robust Multi-array Average (RMA) procedure was used to normalize data within arrays (probeset summarization, background correction and log2-transformation) and between arrays (quantile normalization).

Data table
ID_REF VALUE
10338001 12.82417216
10338002 5.791785009
10338003 11.0303505
10338004 10.12449425
10338005 2.647533972
10338006 2.846698063
10338007 3.256778209
10338008 3.839569244
10338009 7.09256475
10338010 2.727827601
10338011 5.427541584
10338012 2.798988195
10338013 2.534532982
10338014 2.596177955
10338015 2.517505358
10338016 6.756193523
10338017 13.72616566
10338018 6.141235252
10338019 4.836357854
10338020 7.194663212

Total number of rows: 35556

Table truncated, full table size 725 Kbytes.




Supplementary file Size Download File type/resource
GSM4294039_SnMac_MHCII_hi_D10_3.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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