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Sample GSM4294038 Query DataSets for GSM4294038
Status Public on Feb 04, 2020
Title MHCII high scMacs 10 days after nerve crush SnMac_MHCII_hi_D10_2
Sample type RNA
 
Source name Sciatic Nerve
Organism Mus musculus
Characteristics strain: C57BL/6
Treatment protocol All Methods listed in Ydens et al. Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system . Nature Neuroscience. 2019.
Growth protocol All Methods listed in Ydens et al. Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system . Nature Neuroscience. 2019.
Extracted molecule total RNA
Extraction protocol All Methods listed in Ydens et al. Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system . Nature Neuroscience. 2019.
Label biotin
Label protocol All Methods listed in Ydens et al. Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system . Nature Neuroscience. 2019.
 
Hybridization protocol All Methods listed in Ydens et al. Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system . Nature Neuroscience. 2019.
Scan protocol Affymetrix Gene ChIP Scanner 3000 7G
Description MHCII high scMacs 10 days after nerve crush
MHCII high scMacs 10 days after nerve crush
Data processing Data were processed using limma Bioconductor. Normalisation was done by RMA.
 
Submission date Feb 03, 2020
Last update date Feb 04, 2020
Contact name Liesbet Martens
E-mail(s) liesbet.martens@irc.vib-ugent.be
Organization name VIB-University of Ghent
Department VIB Inflammation Research Center
Street address Technologiepark 927
City Zwijnaarde
ZIP/Postal code 9052
Country Belgium
 
Platform ID GPL6246
Series (2)
GSE144702 Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system (microarray)
GSE144708 Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system

Data table header descriptions
ID_REF
VALUE All samples passed quality control, and the Robust Multi-array Average (RMA) procedure was used to normalize data within arrays (probeset summarization, background correction and log2-transformation) and between arrays (quantile normalization).

Data table
ID_REF VALUE
10338001 12.99191151
10338002 5.816780399
10338003 11.18709998
10338004 10.40484278
10338005 2.700596359
10338006 2.902549081
10338007 3.294608051
10338008 3.889490261
10338009 7.312165086
10338010 2.764226061
10338011 5.361512354
10338012 2.839725636
10338013 2.547268964
10338014 2.625786143
10338015 2.555528435
10338016 6.828050544
10338017 13.80814336
10338018 6.076701415
10338019 4.901270559
10338020 7.356065616

Total number of rows: 35556

Table truncated, full table size 725 Kbytes.




Supplementary file Size Download File type/resource
GSM4294038_SnMac_MHCII_hi_D10_2.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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