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Sample GSM4294029 Query DataSets for GSM4294029
Status Public on Feb 04, 2020
Title MHCII low scMacs 1.5 days after nerve crush SnMac_MHCII_lo_D1.5_2
Sample type RNA
 
Source name Sciatic Nerve
Organism Mus musculus
Characteristics strain: C57BL/6
Treatment protocol All Methods listed in Ydens et al. Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system . Nature Neuroscience. 2019.
Growth protocol All Methods listed in Ydens et al. Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system . Nature Neuroscience. 2019.
Extracted molecule total RNA
Extraction protocol All Methods listed in Ydens et al. Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system . Nature Neuroscience. 2019.
Label biotin
Label protocol All Methods listed in Ydens et al. Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system . Nature Neuroscience. 2019.
 
Hybridization protocol All Methods listed in Ydens et al. Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system . Nature Neuroscience. 2019.
Scan protocol Affymetrix Gene ChIP Scanner 3000 7G
Description MHCII low scMacs 1.5 days after nerve crush
MHCII low scMacs 1.5 days after nerve crush
Data processing Data were processed using limma Bioconductor. Normalisation was done by RMA.
 
Submission date Feb 03, 2020
Last update date Feb 04, 2020
Contact name Liesbet Martens
E-mail(s) liesbet.martens@irc.vib-ugent.be
Organization name VIB-University of Ghent
Department VIB Inflammation Research Center
Street address Technologiepark 927
City Zwijnaarde
ZIP/Postal code 9052
Country Belgium
 
Platform ID GPL6246
Series (2)
GSE144702 Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system (microarray)
GSE144708 Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system

Data table header descriptions
ID_REF
VALUE All samples passed quality control, and the Robust Multi-array Average (RMA) procedure was used to normalize data within arrays (probeset summarization, background correction and log2-transformation) and between arrays (quantile normalization).

Data table
ID_REF VALUE
10338001 12.698123
10338002 5.728878784
10338003 10.81897322
10338004 10.0029423
10338005 2.592304113
10338006 2.7911622
10338007 3.169851224
10338008 3.705001641
10338009 7.07263862
10338010 2.665814601
10338011 5.303259868
10338012 2.697403702
10338013 2.476121774
10338014 2.511983663
10338015 2.454489935
10338016 6.677164553
10338017 13.72167165
10338018 6.033635334
10338019 4.787875753
10338020 7.211920073

Total number of rows: 35556

Table truncated, full table size 725 Kbytes.




Supplementary file Size Download File type/resource
GSM4294029_SnMac_MHCII_lo_D1.5_2.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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