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Sample GSM4294028 Query DataSets for GSM4294028
Status Public on Feb 04, 2020
Title MHCII low scMacs 1.5 days after nerve crush SnMac_MHCII_lo_D1.5_1
Sample type RNA
 
Source name Sciatic Nerve
Organism Mus musculus
Characteristics strain: C57BL/6
Treatment protocol All Methods listed in Ydens et al. Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system . Nature Neuroscience. 2019.
Growth protocol All Methods listed in Ydens et al. Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system . Nature Neuroscience. 2019.
Extracted molecule total RNA
Extraction protocol All Methods listed in Ydens et al. Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system . Nature Neuroscience. 2019.
Label biotin
Label protocol All Methods listed in Ydens et al. Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system . Nature Neuroscience. 2019.
 
Hybridization protocol All Methods listed in Ydens et al. Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system . Nature Neuroscience. 2019.
Scan protocol Affymetrix Gene ChIP Scanner 3000 7G
Description MHCII low scMacs 1.5 days after nerve crush
MHCII low scMacs 1.5 days after nerve crush
Data processing Data were processed using limma Bioconductor. Normalisation was done by RMA.
 
Submission date Feb 03, 2020
Last update date Feb 04, 2020
Contact name Liesbet Martens
E-mail(s) liesbet.martens@irc.vib-ugent.be
Organization name VIB-University of Ghent
Department VIB Inflammation Research Center
Street address Technologiepark 927
City Zwijnaarde
ZIP/Postal code 9052
Country Belgium
 
Platform ID GPL6246
Series (2)
GSE144702 Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system (microarray)
GSE144708 Distinct signature, origin and dynamics of macrophages in the peripheral and central nervous system

Data table header descriptions
ID_REF
VALUE All samples passed quality control, and the Robust Multi-array Average (RMA) procedure was used to normalize data within arrays (probeset summarization, background correction and log2-transformation) and between arrays (quantile normalization).

Data table
ID_REF VALUE
10338001 12.77971317
10338002 5.81551055
10338003 10.98575448
10338004 10.20681252
10338005 2.666200548
10338006 2.888763261
10338007 3.28457749
10338008 3.820434745
10338009 7.283340739
10338010 2.758220297
10338011 5.44967194
10338012 2.822036361
10338013 2.528581876
10338014 2.590001877
10338015 2.554847286
10338016 6.822859703
10338017 13.68157394
10338018 6.141383032
10338019 4.88158295
10338020 7.42944385

Total number of rows: 35556

Table truncated, full table size 725 Kbytes.




Supplementary file Size Download File type/resource
GSM4294028_SnMac_MHCII_lo_D1.5_1.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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