|
| Status |
Public on Dec 16, 2020 |
| Title |
22rv1_h3k27ac_hic_rep2 |
| Sample type |
SRA |
| |
|
| Source name |
Prostate
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: 22Rv1
tissue: Prostate
|
| Growth protocol |
DMEM 10% FBS
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
ARIMA-HIC kit
Libraries were prepared following ARIMA-HIC protocol and the hyper prep kit illumina from Kapa Biosystems (#KK8500)
Truseq index from illumina (cat 20015960)
|
| |
|
| Library strategy |
Hi-C |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Data processing |
HiC analysis performed with Juicer 1.5 pipeline
Hic Analysis with HiC pro pipeline
Genome_build: hg38 obtained from USCS and indexed with BWA
Supplementary_files_format_and_content: hic files
|
| |
|
| Submission date |
Jan 09, 2020 |
| Last update date |
Dec 16, 2020 |
| Contact name |
Musaddeque Ahmed |
| E-mail(s) |
musaddeque.ahmed@gmail.com
|
| Organization name |
University health Network
|
| Lab |
He Lab
|
| Street address |
101 College St
|
| City |
Toronto |
| State/province |
ON |
| ZIP/Postal code |
M5G1L7 |
| Country |
Canada |
| |
|
| Platform ID |
GPL24676 |
| Series (2) |
| GSE142811 |
CRISPRi screen of prostate cancer associated risk cis-regulatory elements |
| GSE143370 |
CRISPRi screen of prostate cancer associated risk cis-regulatory elements [Hi-C] |
|
| Relations |
| BioSample |
SAMN13810022 |
| SRA |
SRX7528575 |
