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Sample GSM4138187 Query DataSets for GSM4138187
Status Public on Apr 17, 2020
Title Control_rep1
Sample type SRA
Source name HGC27 cell
Organism Homo sapiens
Characteristics cell line: HGC27
genotype/variation: Vector transduced
cell type: gastric cancer
Treatment protocol The AFDN-DT overexpression lentivirus were transfected into the HGC27 cells, and positively transduced cells were selected by puromycin.
Growth protocol HGC27 cell line was purchased from the Shanghai Cell Bank of the Chinese Academy of Sciences and cultured in RPMI 1640 (Hyclone, UT, USA) supplemented with 10% fetal bovine serum (FBS)
Extracted molecule total RNA
Extraction protocol RNA was extracted using TRIzol reagent (Life Technologies, CA, USA) according to manufactures’ instructions
The RNA-seq library were constructed using the VAHTS mRNA-seq V2 Library Prep Kit for Illumina® (NR601, Vazyme, China) according to manufactures’ instruction.
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NovaSeq 6000
Data processing All sequenced reads were mapped to the hg38 genome using HISAT2
The sam files were sorted with the samtools
The expression of each gene was quantified using the DEseq2
Submission date Oct 24, 2019
Last update date Apr 17, 2020
Contact name Ping Xu
Organization name Songjiang Hospital Affiliated to Shanghai Jiaotong University School of Medicine
Street address Songjiang Hospital Affiliated to Shanghai Jiaotong University School of Medicine
City Shanghai
ZIP/Postal code 201600
Country China
Platform ID GPL24676
Series (1)
GSE139326 Tumor suppressive long non-coding RNA AFDN-DT inhibits gastric cancer invasion via transcriptional regulation
BioSample SAMN13108281
SRA SRX7051116

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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