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Sample GSM4090835 Query DataSets for GSM4090835
Status Public on May 28, 2020
Title CAD FMR1KO Fmr1-RGG rescue Soma C
Sample type SRA
Source name CAD cell line
Organism Mus musculus
Characteristics cell compartment: soma
genotype: FMR1 KO, Fmr1-RGG rescue
Extracted molecule polyA RNA
Extraction protocol RNA extraction was performed with Qiagen or Zymo Microprep Kits
Illumina TruSeq
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NovaSeq 6000
Data processing Adapters were trimmed from the 3' end of reads using cutadapt
Transcript abundances were calculated using salmon or kallisto against the mm10 or hg38 genomes
Gene abundances were calculated from transcript abundances using tximport
Reads were mapped to mouse genome (mm10 or hg38) using STAR
Genome_build: mm10 and hg38
Supplementary_files_format_and_content: transcript abundances in txt format
Submission date Sep 23, 2019
Last update date May 28, 2020
Contact name Matthew Taliaferro
Organization name University of Colorado Anschutz Medical Campus
Department Biology
Street address 12801 E 17th Ave, RC1 South Room 10403D
City Aurora
State/province CO
ZIP/Postal code 80045
Country USA
Platform ID GPL24247
Series (1)
GSE137878 Regulation of RNA localization by FMR1
BioSample SAMN12822498
SRA SRX6890759

Supplementary file Size Download File type/resource
GSM4090835_CAD_FMR1KO_RGG_soma_rep3.salmon.txt.gz 1.7 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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