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Sample GSM4087735 Query DataSets for GSM4087735
Status Public on Sep 21, 2019
Title BT16
Sample type SRA
Source name Brain tumor cell line
Organism Homo sapiens
Characteristics tumor type: AT/RT tumor
origin: Pediatric
passage: 8
cell line: BT16
Treatment protocol No treatments administered
Growth protocol Standard mammalian tissue culture
Extracted molecule total RNA
Extraction protocol Zymo RNA extraction kit
Illumina TrueSeq
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NovaSeq 6000
Data processing Quality trimming using trimmomatic with a  min length of 130 bp and phred score of 33
Alignment using gnsap to hg38 max mismatch of 0.06
Generation of normalized expression counts using cufflinks
Genome_build: hg38
Supplementary_files_format_and_content: Sorted file, details fpkm lists
Submission date Sep 20, 2019
Last update date Sep 22, 2019
Contact name Jean Mulcahy Levy
Organization name University of Colorado - Anschutz
Street address 12800 E 19th Ave Rm 4401A
City Aurora
State/province CO
ZIP/Postal code 80045
Country USA
Platform ID GPL24676
Series (1)
GSE137777 Proteasome Inhibition as a Therapeutic Approach in Atypical Teratoid/Rhabdoid Tumors
BioSample SAMN12797071
SRA SRX6878453

Supplementary file Size Download File type/resource
GSM4087735_BT16_S50_L003_R1_001.FPKM.sorted.txt.gz 1.7 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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