|
| Status |
Public on Sep 21, 2019 |
| Title |
1337X_PCL |
| Sample type |
SRA |
| |
|
| Source name |
Brain tumor
|
| Organism |
Homo sapiens |
| Characteristics |
tumor type: AT/RT tumor
origin: Pediatric
passage: 5
|
| Treatment protocol |
No treatments administered
|
| Growth protocol |
Standard mammalian tissue culture
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Zymo RNA extraction kit
Illumina TrueSeq
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Data processing |
Quality trimming using trimmomatic with a min length of 130 bp and phred score of 33
Alignment using gnsap to hg38 max mismatch of 0.06
Generation of normalized expression counts using cufflinks
Genome_build: hg38
Supplementary_files_format_and_content: Sorted file, details fpkm lists
|
| |
|
| Submission date |
Sep 20, 2019 |
| Last update date |
Sep 22, 2019 |
| Contact name |
Jean Mulcahy Levy |
| E-mail(s) |
jean.mulcahylevy@cuanschutz.edu
|
| Organization name |
University of Colorado - Anschutz
|
| Street address |
12800 E 19th Ave Rm 4401A
|
| City |
Aurora |
| State/province |
CO |
| ZIP/Postal code |
80045 |
| Country |
USA |
| |
|
| Platform ID |
GPL24676 |
| Series (1) |
| GSE137777 |
Proteasome Inhibition as a Therapeutic Approach in Atypical Teratoid/Rhabdoid Tumors |
|
| Relations |
| BioSample |
SAMN12797074 |
| SRA |
SRX6878451 |
