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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Feb 24, 2020 |
| Title |
miR7_SCR_s2: LNA-scramble treated mouse enteroids scRNA-seq |
| Sample type |
SRA |
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| Source name |
small intestine
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| Organism |
Mus musculus |
| Characteristics |
tissue: Enteroids formed from jejunal crypts
strain: C57BL/6J
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| Extracted molecule |
total RNA |
| Extraction protocol |
Libraries were prepped according to 10X Genomics Chromium Single Cell 3' kits (v2 chemistry)
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
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| Data processing |
Sequencing was demultiplexed, aligned to the genome, and quality checked using 10X Genomics Cell Ranger software.
Genome_build: mm10
Supplementary_files_format_and_content: Processed data contains barcodes, gene list, and counts matrix.
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| Submission date |
Aug 16, 2019 |
| Last update date |
Feb 24, 2020 |
| Contact name |
Praveen Sethupathy |
| Organization name |
Cornell University
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| Lab |
Dr. Sethupathy Lab
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| Street address |
Cornell University College of Veterinary Medicine, Box 17
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| City |
Ithica |
| State/province |
NY |
| ZIP/Postal code |
14853 |
| Country |
USA |
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| Platform ID |
GPL19057 |
| Series (1) |
| GSE118814 |
MicroRNA-7 regulates the plasticity of the enteroendocrine lineage |
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| Relations |
| BioSample |
SAMN12587376 |
| SRA |
SRX6726364 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM4037332_miR7_SCR_s2_barcodes.tsv.gz |
1.5 Kb |
(ftp)(http) |
TSV |
| GSM4037332_miR7_SCR_s2_genes.tsv.gz |
221.0 Kb |
(ftp)(http) |
TSV |
| GSM4037332_miR7_SCR_s2_matrix.mtx.gz |
856.1 Kb |
(ftp)(http) |
MTX |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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