|
| Status |
Public on Aug 05, 2019 |
| Title |
Artis_B4 |
| Sample type |
SRA |
| |
|
| Source name |
medial prefrontal cortex (mPFC)
|
| Organism |
Mus musculus |
| Characteristics |
age: adult
brain region: medial prefrontal cortex
treatment: Control
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
nuclei extraction with EZ prep
3' polyA RNA seq
10X Genomics Chromium Prep V3
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
HiSeq X Ten |
| |
|
| Description |
Single nucleus polyA RNA transcriptome
snRNAseq data from medial prefrontal cortex of control adult mouse
|
| Data processing |
3' polyA RNA-seq
Cellranger toolkit (v2.2.0)
Genome_build: mm10 mouse transcriptome with pre-mRNA annotations, similar to Bakken et al. 2018.
Supplementary_files_format_and_content: Anndata object of UMI counts and metadata, where rows are cells/barcodes and columns are genes. From cellranger raw gene matrix output.
|
| |
|
| Submission date |
Aug 02, 2019 |
| Last update date |
Aug 06, 2019 |
| Contact name |
Hattie Chung |
| Organization name |
Broad Institute
|
| Street address |
415 Main St
|
| City |
Cambridge |
| State/province |
MA |
| ZIP/Postal code |
02142 |
| Country |
USA |
| |
|
| Platform ID |
GPL21273 |
| Series (1) |
| GSE135326 |
The intestinal microbiota regulate neuronal function and fear extinction learning |
|
| Relations |
| BioSample |
SAMN12476549 |
