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Sample GSM4005493 Query DataSets for GSM4005493
Status Public on Aug 05, 2019
Title Artis_A4
Sample type SRA
Source name medial prefrontal cortex (mPFC)
Organism Mus musculus
Characteristics age: adult
brain region: medial prefrontal cortex
treatment: Antibiotic-treated
Extracted molecule polyA RNA
Extraction protocol nuclei extraction with EZ prep
3' polyA RNA seq
10X Genomics Chromium Prep V3
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model HiSeq X Ten
Description Single nucleus polyA RNA transcriptome
snRNAseq data from medial prefrontal cortex of antibiotic treated adult mouse
Data processing 3' polyA RNA-seq
Cellranger toolkit (v2.2.0)
Genome_build: mm10 mouse transcriptome with pre-mRNA annotations, similar to Bakken et al. 2018.
Supplementary_files_format_and_content: Anndata object of UMI counts and metadata, where rows are cells/barcodes and columns are genes. From cellranger raw gene matrix output.
Submission date Aug 02, 2019
Last update date Aug 06, 2019
Contact name Hattie Chung
Organization name Broad Institute
Street address 415 Main St
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
Platform ID GPL21273
Series (1)
GSE135326 The intestinal microbiota regulate neuronal function and fear extinction learning
BioSample SAMN12476552

Supplementary file Size Download File type/resource
GSM4005493_Artis_A4_raw_feature_bc_matrix.h5 181.6 Mb (ftp)(http) H5
Raw data are available in SRA
Processed data provided as supplementary file

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