|
Status |
Public on Jun 06, 2020 |
Title |
GATA2 deficiency patient 3 |
Sample type |
SRA |
|
|
Source name |
human bone marrow
|
Organism |
Homo sapiens |
Characteristics |
markers: Lineage(CD3CD14CD19)-CD34+ Sex: F age: 22 subject: patient
|
Extracted molecule |
total RNA |
Extraction protocol |
Libraries were generted using Genomics Chromium Single Cell ‘3 Solution Kit V2 from 10XGenomics.
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 3000 |
|
|
Data processing |
The raw data was processed with cellanger from 10XGenomics company. Paired-end reads were mapped to the hg19 genome with STAR for read counts of genes annotated in ENSEMBL. Genome_build: hg19
|
|
|
Submission date |
Jul 31, 2019 |
Last update date |
Jun 06, 2020 |
Contact name |
Shouguo Gao |
E-mail(s) |
gaos2@nih.gov
|
Phone |
3014029014
|
Organization name |
National Institutes of Health
|
Department |
NHLBI
|
Lab |
Hematology Branch
|
Street address |
9000 Rockville Pike
|
City |
Bethesda |
State/province |
MD |
ZIP/Postal code |
20892 |
Country |
USA |
|
|
Platform ID |
GPL21290 |
Series (1) |
GSE135194 |
Single-cell RNA-seq reveals a distinct transcriptome signature of hematopoiesis in GATA2 deficiency |
|
Relations |
BioSample |
SAMN12415686 |
SRA |
SRX6627995 |