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Sample GSM3993345 Query DataSets for GSM3993345
Status Public on Jun 06, 2020
Title GATA2 deficiency patient 3
Sample type SRA
 
Source name human bone marrow
Organism Homo sapiens
Characteristics markers: Lineage(CD3CD14CD19)-CD34+
Sex: F
age: 22
subject: patient
Extracted molecule total RNA
Extraction protocol Libraries were generted using Genomics Chromium Single Cell ‘3 Solution Kit V2 from 10XGenomics.
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 3000
 
Data processing The raw data was processed with cellanger from 10XGenomics company.
Paired-end reads were mapped to the hg19 genome with STAR for read counts of genes annotated in ENSEMBL.
Genome_build: hg19
 
Submission date Jul 31, 2019
Last update date Jun 06, 2020
Contact name Shouguo Gao
E-mail(s) gaos2@nih.gov
Phone 3014029014
Organization name National Institutes of Health
Department NHLBI
Lab Hematology Branch
Street address 9000 Rockville Pike
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL21290
Series (1)
GSE135194 Single-cell RNA-seq reveals a distinct transcriptome signature of hematopoiesis in GATA2 deficiency
Relations
BioSample SAMN12415686
SRA SRX6627995

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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