|
| Status |
Public on Jun 06, 2020 |
| Title |
GATA2 deficiency patient 2 |
| Sample type |
SRA |
| |
|
| Source name |
human bone marrow
|
| Organism |
Homo sapiens |
| Characteristics |
markers: Lineage(CD3CD14CD19)-CD34+
Sex: F
age: 42
subject: patient
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Libraries were generted using Genomics Chromium Single Cell ‘3 Solution Kit V2 from 10XGenomics.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 3000 |
| |
|
| Data processing |
The raw data was processed with cellanger from 10XGenomics company.
Paired-end reads were mapped to the hg19 genome with STAR for read counts of genes annotated in ENSEMBL.
Genome_build: hg19
|
| |
|
| Submission date |
Jul 31, 2019 |
| Last update date |
Jun 06, 2020 |
| Contact name |
Shouguo Gao |
| E-mail(s) |
gaos2@nih.gov
|
| Phone |
3014029014
|
| Organization name |
National Institutes of Health
|
| Department |
NHLBI
|
| Lab |
Hematology Branch
|
| Street address |
9000 Rockville Pike
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20892 |
| Country |
USA |
| |
|
| Platform ID |
GPL21290 |
| Series (1) |
| GSE135194 |
Single-cell RNA-seq reveals a distinct transcriptome signature of hematopoiesis in GATA2 deficiency |
|
| Relations |
| BioSample |
SAMN12415687 |
| SRA |
SRX6627994 |
