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Sample GSM3983372 Query DataSets for GSM3983372
Status Public on Nov 04, 2019
Title OGT-deficient liver tissue [OGT_KO_3]
Sample type SRA
 
Source name Liver tissue
Organism Mus musculus
Characteristics strain/background: C57BL/6J
genotype/variation: OGT-deficient
tissue: Liver
age: 5w
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from liver tissue with TRIzol reagent according to the manufacturer's protocol.
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NovaSeq 6000
 
Data processing Sequencing reads were aligned against the mouse mm10 reference genome using the TopHat2 software version 2.1.0 with the default parameters.
Mapped reads were assigned to gene features and quantified using the HTSeq software version 0.9.1.
Genome_build: mm10 (GRCm38)
Supplementary_files_format_and_content: *.txt: Tab-delimited text files include HTSeq raw abundance values for each sample.
 
Submission date Jul 28, 2019
Last update date Nov 04, 2019
Contact name Xiaoyong Yang
E-mail(s) xiaoyong.yang@yale.edu
Organization name Yale University
Department Comparative Medicine
Street address 375 Congress Ave
City New Haven
State/province CT
ZIP/Postal code 06520-8016
Country USA
 
Platform ID GPL24247
Series (1)
GSE134993 Genome-wide changes in OGT-deficient mouse liver tissue
Relations
BioSample SAMN12391857
SRA SRX6610154

Supplementary file Size Download File type/resource
GSM3983372_OGT_KO_3.txt.gz 102.0 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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