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Sample GSM395737 Query DataSets for GSM395737
Status Public on May 21, 2010
Title SNU90
Sample type RNA
Source name cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: cholangiocarcinoma
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol 5 ug of total RNA from the HCC tissues was used for labeling according to standard protocols recommended by Affymetrix, Inc
Hybridization protocol Hybridization and detection were performed with Affymetrix Human Genome U133A 2.0 chips according to standard protocols.
Scan protocol GeneChips were scanned GeneChip scanner 3000 using GCOS software
Description Gene expression data from hepatocellular carcinoma
Data processing The data were analyzed with RMA normalization method.
Submission date Apr 21, 2009
Last update date Apr 13, 2010
Contact name Hyun Goo Woo
Organization name Ajou University School of Medicine
Street address 164 Worldcup-ro, Yeongtong-gu
City Suwon
ZIP/Postal code 443-721
Country South Korea
Platform ID GPL571
Series (1)
GSE15765 Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma

Data table header descriptions

Data table
1007_s_at 9.488882271
1053_at 5.634974565
117_at 6.342276607
121_at 7.402928548
1255_g_at 2.839986448
1294_at 6.419887079
1316_at 5.520920817
1320_at 4.039387531
1405_i_at 4.178699388
1431_at 3.332885687
1438_at 5.438955458
1487_at 8.250597703
1494_f_at 5.252489621
1598_g_at 7.499988544
160020_at 7.337597541
1729_at 7.645152144
1773_at 4.563397906
177_at 6.170373527
179_at 7.642386665
1861_at 4.37714318

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM395737.CEL.gz 1.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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