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Sample GSM395734 Query DataSets for GSM395734
Status Public on May 21, 2010
Title SNU87
Sample type RNA
 
Source name cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: cholangiocarcinoma
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol 5 ug of total RNA from the HCC tissues was used for labeling according to standard protocols recommended by Affymetrix, Inc
 
Hybridization protocol Hybridization and detection were performed with Affymetrix Human Genome U133A 2.0 chips according to standard protocols.
Scan protocol GeneChips were scanned GeneChip scanner 3000 using GCOS software
Description Gene expression data from hepatocellular carcinoma
Data processing The data were analyzed with RMA normalization method.
 
Submission date Apr 21, 2009
Last update date Apr 13, 2010
Contact name Hyun Goo Woo
Organization name Ajou University School of Medicine
Street address 164 Worldcup-ro, Yeongtong-gu
City Suwon
ZIP/Postal code 443-721
Country South Korea
 
Platform ID GPL571
Series (1)
GSE15765 Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma

Data table header descriptions
ID_REF
VALUE RMA

Data table
ID_REF VALUE
1007_s_at 8.004987891
1053_at 5.657214638
117_at 5.433412048
121_at 7.130033979
1255_g_at 2.887523817
1294_at 7.12514325
1316_at 5.558508371
1320_at 3.988468023
1405_i_at 8.116075705
1431_at 12.33403345
1438_at 5.023493146
1487_at 8.016215967
1494_f_at 11.24903717
1598_g_at 8.565598046
160020_at 6.75806078
1729_at 6.933200342
1773_at 4.399762145
177_at 5.44387337
179_at 8.390755578
1861_at 4.542145284

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM395734.CEL.gz 1.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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