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Sample GSM395733 Query DataSets for GSM395733
Status Public on May 21, 2010
Title SNU86
Sample type RNA
Source name cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: cholangiocarcinoma
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol 5 ug of total RNA from the HCC tissues was used for labeling according to standard protocols recommended by Affymetrix, Inc
Hybridization protocol Hybridization and detection were performed with Affymetrix Human Genome U133A 2.0 chips according to standard protocols.
Scan protocol GeneChips were scanned GeneChip scanner 3000 using GCOS software
Description Gene expression data from hepatocellular carcinoma
Data processing The data were analyzed with RMA normalization method.
Submission date Apr 21, 2009
Last update date Apr 13, 2010
Contact name Hyun Goo Woo
Organization name Ajou University School of Medicine
Street address 164 Worldcup-ro, Yeongtong-gu
City Suwon
ZIP/Postal code 443-721
Country South Korea
Platform ID GPL571
Series (1)
GSE15765 Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma

Data table header descriptions

Data table
1007_s_at 10.26037757
1053_at 5.435023936
117_at 5.249364793
121_at 7.216851427
1255_g_at 2.883914082
1294_at 6.836307495
1316_at 6.034127714
1320_at 4.035680905
1405_i_at 6.257317804
1431_at 3.065521357
1438_at 5.670401856
1487_at 8.456138497
1494_f_at 5.525535493
1598_g_at 8.835792902
160020_at 7.54007114
1729_at 7.632143804
1773_at 4.782069531
177_at 5.060941394
179_at 8.305659157
1861_at 5.09546138

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM395733.CEL.gz 1.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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