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Sample GSM395732 Query DataSets for GSM395732
Status Public on May 21, 2010
Title SNU85
Sample type RNA
Source name cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: cholangiocarcinoma
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol 5 ug of total RNA from the HCC tissues was used for labeling according to standard protocols recommended by Affymetrix, Inc
Hybridization protocol Hybridization and detection were performed with Affymetrix Human Genome U133A 2.0 chips according to standard protocols.
Scan protocol GeneChips were scanned GeneChip scanner 3000 using GCOS software
Description Gene expression data from hepatocellular carcinoma
Data processing The data were analyzed with RMA normalization method.
Submission date Apr 21, 2009
Last update date Apr 13, 2010
Contact name Hyun Goo Woo
Organization name Ajou University School of Medicine
Street address 164 Worldcup-ro, Yeongtong-gu
City Suwon
ZIP/Postal code 443-721
Country South Korea
Platform ID GPL571
Series (1)
GSE15765 Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma

Data table header descriptions

Data table
1007_s_at 9.555052338
1053_at 4.648226983
117_at 5.650223394
121_at 7.236354535
1255_g_at 3.674137274
1294_at 6.776804188
1316_at 6.114625214
1320_at 4.301548194
1405_i_at 5.717174655
1431_at 3.636719326
1438_at 5.672944259
1487_at 8.375613391
1494_f_at 6.456267758
1598_g_at 9.437228678
160020_at 7.549226543
1729_at 7.08913342
1773_at 4.661825863
177_at 5.354899993
179_at 8.837944148
1861_at 5.066867625

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM395732.CEL.gz 1.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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