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Sample GSM395731 Query DataSets for GSM395731
Status Public on May 21, 2010
Title SNU84
Sample type RNA
Source name cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: cholangiocarcinoma
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol 5 ug of total RNA from the HCC tissues was used for labeling according to standard protocols recommended by Affymetrix, Inc
Hybridization protocol Hybridization and detection were performed with Affymetrix Human Genome U133A 2.0 chips according to standard protocols.
Scan protocol GeneChips were scanned GeneChip scanner 3000 using GCOS software
Description Gene expression data from hepatocellular carcinoma
Data processing The data were analyzed with RMA normalization method.
Submission date Apr 21, 2009
Last update date Apr 13, 2010
Contact name Hyun Goo Woo
Organization name Ajou University School of Medicine
Street address 164 Worldcup-ro, Yeongtong-gu
City Suwon
ZIP/Postal code 443-721
Country South Korea
Platform ID GPL571
Series (1)
GSE15765 Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma

Data table header descriptions

Data table
1007_s_at 9.727740852
1053_at 5.795417612
117_at 6.368737567
121_at 8.451192799
1255_g_at 3.248803534
1294_at 7.329558319
1316_at 6.780434031
1320_at 4.174651065
1405_i_at 6.693072923
1431_at 6.944109583
1438_at 5.073019645
1487_at 7.001260301
1494_f_at 6.288571157
1598_g_at 9.579265863
160020_at 8.197328786
1729_at 7.43842737
1773_at 4.556671817
177_at 5.065602321
179_at 7.649586102
1861_at 4.718593394

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM395731.CEL.gz 1.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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