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Sample GSM395728 Query DataSets for GSM395728
Status Public on May 21, 2010
Title SNU81
Sample type RNA
Source name cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: cholangiocarcinoma
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol 5 ug of total RNA from the HCC tissues was used for labeling according to standard protocols recommended by Affymetrix, Inc
Hybridization protocol Hybridization and detection were performed with Affymetrix Human Genome U133A 2.0 chips according to standard protocols.
Scan protocol GeneChips were scanned GeneChip scanner 3000 using GCOS software
Description Gene expression data from hepatocellular carcinoma
Data processing The data were analyzed with RMA normalization method.
Submission date Apr 21, 2009
Last update date Apr 13, 2010
Contact name Hyun Goo Woo
Organization name Ajou University School of Medicine
Street address 164 Worldcup-ro, Yeongtong-gu
City Suwon
ZIP/Postal code 443-721
Country South Korea
Platform ID GPL571
Series (1)
GSE15765 Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma

Data table header descriptions

Data table
1007_s_at 9.158582292
1053_at 7.174555467
117_at 4.700319761
121_at 7.109647101
1255_g_at 2.971565298
1294_at 6.899126357
1316_at 4.996646615
1320_at 3.464102285
1405_i_at 7.845130278
1431_at 4.601716806
1438_at 4.899337882
1487_at 7.508233405
1494_f_at 5.081695802
1598_g_at 7.45806254
160020_at 7.723976106
1729_at 7.696667135
1773_at 4.368014905
177_at 4.682021949
179_at 7.489293089
1861_at 5.661095172

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM395728.CEL.gz 1.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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