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Sample GSM395727 Query DataSets for GSM395727
Status Public on May 21, 2010
Title SNU80
Sample type RNA
 
Source name cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: cholangiocarcinoma
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol 5 ug of total RNA from the HCC tissues was used for labeling according to standard protocols recommended by Affymetrix, Inc
 
Hybridization protocol Hybridization and detection were performed with Affymetrix Human Genome U133A 2.0 chips according to standard protocols.
Scan protocol GeneChips were scanned GeneChip scanner 3000 using GCOS software
Description Gene expression data from hepatocellular carcinoma
Data processing The data were analyzed with RMA normalization method.
 
Submission date Apr 21, 2009
Last update date Apr 13, 2010
Contact name Hyun Goo Woo
Organization name Ajou University School of Medicine
Street address 164 Worldcup-ro, Yeongtong-gu
City Suwon
ZIP/Postal code 443-721
Country South Korea
 
Platform ID GPL571
Series (1)
GSE15765 Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma

Data table header descriptions
ID_REF
VALUE RMA

Data table
ID_REF VALUE
1007_s_at 9.526042933
1053_at 4.34321705
117_at 6.303502676
121_at 8.310679967
1255_g_at 3.168328823
1294_at 8.089137706
1316_at 5.603171398
1320_at 4.144940198
1405_i_at 6.775593919
1431_at 4.176018075
1438_at 4.297979214
1487_at 7.841621856
1494_f_at 5.215396527
1598_g_at 7.981503365
160020_at 7.081141101
1729_at 8.636005265
1773_at 4.70327967
177_at 7.95735987
179_at 8.161782566
1861_at 4.121447211

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM395727.CEL.gz 1.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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