GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM395724 Query DataSets for GSM395724
Status Public on May 21, 2010
Title SNU77
Sample type RNA
Source name combined hepatocellular carcinoma and cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: combined hepatocellular carcinoma and cholangiocarcinoma
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol 5 ug of total RNA from the HCC tissues was used for labeling according to standard protocols recommended by Affymetrix, Inc
Hybridization protocol Hybridization and detection were performed with Affymetrix Human Genome U133A 2.0 chips according to standard protocols.
Scan protocol GeneChips were scanned GeneChip scanner 3000 using GCOS software
Description Gene expression data from hepatocellular carcinoma
Data processing The data were analyzed with RMA normalization method.
Submission date Apr 21, 2009
Last update date Apr 13, 2010
Contact name Hyun Goo Woo
Organization name Ajou University School of Medicine
Street address 164 Worldcup-ro, Yeongtong-gu
City Suwon
ZIP/Postal code 443-721
Country South Korea
Platform ID GPL571
Series (1)
GSE15765 Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma

Data table header descriptions

Data table
1007_s_at 8.761794754
1053_at 6.239191996
117_at 6.683161836
121_at 6.94272799
1255_g_at 2.608978789
1294_at 9.025113998
1316_at 4.723899265
1320_at 3.619574159
1405_i_at 12.08544535
1431_at 3.763875206
1438_at 4.192998188
1487_at 7.393593344
1494_f_at 4.16522661
1598_g_at 7.989546629
160020_at 7.116016458
1729_at 8.498443724
1773_at 4.77232324
177_at 4.744947212
179_at 7.243921302
1861_at 4.31338326

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM395724.CEL.gz 1.7 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap